Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10029139 |
Family | GH28 |
Protein Properties | Length: 417 Molecular Weight: 44938.8 Isoelectric Point: 4.8291 |
Chromosome | Chromosome/Scaffold: 376 Start: 724936 End: 727083 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 179 | 381 | 0 |
TNCNSVRISNVLVSCPGDSPNTDGIHITASTNVVLQDSKIGTGDDCVSIVSGSSNIKMKRLYCGPGHGISIGSLGKDNSTDFVWKVVLDTALLRETTNGL RIKTWQGGHGYVRGIRYENVQMENVANPIIIDQFYCDSPKSCQNQSAAVEISQIMYRNISGTSKSAKAMKFACSDTVPCSNIVLTNVNLEGKDGTVETFC NSA |
Full Sequence |
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Protein Sequence Length: 417 Download |
MDRILFISFL GFLLVGHGVA GNMVYDTLGM VEELETFDIE EQEELGVLDV PAWEGERGTK 60 VLVNVDSFGA VGDGVVDDTQ AFVNAWKTAC NTTKSVFLVP PGGRYLVNAT KFKGPCADKL 120 IIQIDGTIVA PDEPANWDPS SPRTWLDFSK LNGVIFQGHG VIDGSGSKWW AASCKKNKTN 180 CNSVRISNVL VSCPGDSPNT DGIHITASTN VVLQDSKIGT GDDCVSIVSG SSNIKMKRLY 240 CGPGHGISIG SLGKDNSTDF VWKVVLDTAL LRETTNGLRI KTWQGGHGYV RGIRYENVQM 300 ENVANPIIID QFYCDSPKSC QNQSAAVEIS QIMYRNISGT SKSAKAMKFA CSDTVPCSNI 360 VLTNVNLEGK DGTVETFCNS AQGFGYGVIH PSIDCLTAKD KEQQILEVSE TVHTEL* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 1.0e-81 | 61 | 396 | 373 | + polygalacturonase | ||
PLN03010 | PLN03010 | 9.0e-83 | 64 | 372 | 332 | + polygalacturonase | ||
PLN03003 | PLN03003 | 1.0e-87 | 63 | 396 | 369 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 1.0e-104 | 59 | 391 | 372 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-128 | 57 | 392 | 374 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_173760.2 | 0 | 14 | 416 | 16 | 460 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002299032.1 | 0 | 1 | 405 | 1 | 441 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317091.1 | 0 | 30 | 410 | 1 | 417 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328587.1 | 0 | 1 | 407 | 1 | 444 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525360.1 | 0 | 1 | 416 | 1 | 510 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 9e-19 | 191 | 313 | 192 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 2e-16 | 57 | 386 | 15 | 358 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1hg8_A | 0.000000000000007 | 199 | 353 | 165 | 318 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1nhc_F | 0.00000000000002 | 161 | 369 | 79 | 320 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000000000002 | 161 | 369 | 79 | 320 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |