Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10029511 |
Family | GH28 |
Protein Properties | Length: 478 Molecular Weight: 52554.4 Isoelectric Point: 10.1704 |
Chromosome | Chromosome/Scaffold: 55 Start: 523078 End: 525218 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 121 | 459 | 0 |
WKAACSSTGKTLFVVPKNKVYTLKPITFSGPCRSNLVVKIFGTIKASRNIKDYQKDRRHWIRFEGLQNFRVKGGGTINGNGQVWWQNSCKVNKQLPCQNA PTGVTFYDCKNLIVSNLRFQNSQKMHVSFEKCVNVRVLHLMVIAPGNSPNTDGIHVTATQNIRISQSVIKTGDDCISIVSGSKNVQVSDVTCGPGHGISI GSLGAGNSEAQVSDVLVNRATLSGTTNGVRIKTWQGGSGYARNIQFQNIVMNNVTNPIIIDQNYCDQNEPCHQQGSAVRVSDVVYKNIKGTSWSNVAINL ECSKKYPCKGIVLQDVSLQATKHKEDEEAKDAPSTRASC |
Full Sequence |
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Protein Sequence Length: 478 Download |
MYSSFILSFC LLLASLCCFL SCFASSSPQN NSKPLLFSHG NNHPLSTSAN YRFHGMLSVD 60 HHYHSHSRHH NRRRPSSNYN SRRRRRRSAA SRSAVNIVNV DKFGARADGR SDDTQAFGNA 120 WKAACSSTGK TLFVVPKNKV YTLKPITFSG PCRSNLVVKI FGTIKASRNI KDYQKDRRHW 180 IRFEGLQNFR VKGGGTINGN GQVWWQNSCK VNKQLPCQNA PTGVTFYDCK NLIVSNLRFQ 240 NSQKMHVSFE KCVNVRVLHL MVIAPGNSPN TDGIHVTATQ NIRISQSVIK TGDDCISIVS 300 GSKNVQVSDV TCGPGHGISI GSLGAGNSEA QVSDVLVNRA TLSGTTNGVR IKTWQGGSGY 360 ARNIQFQNIV MNNVTNPIII DQNYCDQNEP CHQQGSAVRV SDVVYKNIKG TSWSNVAINL 420 ECSKKYPCKG IVLQDVSLQA TKHKEDEEAK DAPSTRASCV SVEFTRRGTV TPLCSST* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 1.0e-92 | 96 | 439 | 347 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 2.0e-108 | 97 | 472 | 379 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 7.0e-118 | 125 | 438 | 314 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 5.0e-145 | 97 | 472 | 377 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-151 | 98 | 475 | 380 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF71160.1 | 0 | 94 | 474 | 86 | 455 | AF152758_1 polygalacturonase A [Actinidia chinensis] |
GenBank | AAK81876.1 | 0 | 35 | 475 | 14 | 444 | polygalacturonase PG1 [Vitis vinifera] |
Swiss-Prot | P35336 | 0 | 94 | 474 | 86 | 455 | PGLR_ACTDE RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
RefSeq | XP_002313308.1 | 0 | 90 | 475 | 1 | 376 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517823.1 | 0 | 66 | 474 | 48 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-27 | 188 | 440 | 110 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 3e-20 | 173 | 411 | 55 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-20 | 173 | 411 | 55 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-20 | 173 | 411 | 55 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-20 | 173 | 411 | 55 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |