y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10030232 |
Family | PL4 |
Protein Properties | Length: 802 Molecular Weight: 90881.4 Isoelectric Point: 6.8609 |
Chromosome | Chromosome/Scaffold: 217 Start: 337425 End: 342986 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 211 | 776 | 0 |
AVKLQIWDQYVVIGNGIVEVNLTNPGGQVVGVGYNGVVNLLEVVNHENDRGFIMIHGSSGFYTYTIYEHSQHHPAFELANTRLVIKPRKDIFHEMALSDK KHREMPLPDDRLPPRGRTLDYPEAVLLVDPIEPQFKGQVDDKYEYSMENRDIKVHGWMSREPSVGLWQITPSSEFRSGGPLKQFLASHVGPTNLAVFHST HYTGADMMIPFEANEPWKKVYGPVFIYLNSLNPPDHKQPQQEKITQLSLWEDAKNQLVNQSKQWPYQFVSSPDYALPSQRGSVTGKLSVLEPQISYDGIN LLPPLGALVGLAAPGNPGSWQLESKRYQFWTEVEADGTFRIDNVIAGRYNLYGFVPNFVGEYKYDALIDITPGRTIDVGDVVYQPPRNGSTLWEIGIPDR TAAEFFIPDANPDYINPLYLRQEKYRQYGLWKRYAELYPEADLVYNVHTDDYKKDWFFAQVTRKKDNNGTYQGTTWQVKFKLDVTYPQVNYTLRVALATA NGAELQVRVNEPSTLIPLFTTGEIGKDNTIARHGIHRVYRLFDVTVPGSLLVEGSNTIFLMQAVGK |
Full Sequence |
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Protein Sequence Length: 802 Download |
MANLYVKAVP PADMNKNTEW FMYPGVWTSY MLILFFAWLV VLSVSGCSPG MAWTVVNLGH 60 FAMTYHFFHW KKGTPFGDDQ GIYNGLTWWE QMDNGKQLTR NRKFLTVVPV VLYLIASHTT 120 DYEHPMLFMN TIAVLVLVVA KFPNMHKEGH NQTMERRRFY GSCGIPSSSF LLLLLLIMSS 180 SSPARGLNHG EGRSRKPPGV GVGQEPSSSE AVKLQIWDQY VVIGNGIVEV NLTNPGGQVV 240 GVGYNGVVNL LEVVNHENDR GFIMIHGSSG FYTYTIYEHS QHHPAFELAN TRLVIKPRKD 300 IFHEMALSDK KHREMPLPDD RLPPRGRTLD YPEAVLLVDP IEPQFKGQVD DKYEYSMENR 360 DIKVHGWMSR EPSVGLWQIT PSSEFRSGGP LKQFLASHVG PTNLAVFHST HYTGADMMIP 420 FEANEPWKKV YGPVFIYLNS LNPPDHKQPQ QEKITQLSLW EDAKNQLVNQ SKQWPYQFVS 480 SPDYALPSQR GSVTGKLSVL EPQISYDGIN LLPPLGALVG LAAPGNPGSW QLESKRYQFW 540 TEVEADGTFR IDNVIAGRYN LYGFVPNFVG EYKYDALIDI TPGRTIDVGD VVYQPPRNGS 600 TLWEIGIPDR TAAEFFIPDA NPDYINPLYL RQEKYRQYGL WKRYAELYPE ADLVYNVHTD 660 DYKKDWFFAQ VTRKKDNNGT YQGTTWQVKF KLDVTYPQVN YTLRVALATA NGAELQVRVN 720 EPSTLIPLFT TGEIGKDNTI ARHGIHRVYR LFDVTVPGSL LVEGSNTIFL MQAVGKGPLY 780 GLMYDYIRFE GPLSPNPRDQ N* 840 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam06045 | Rhamnogal_lyase | 3.0e-23 | 259 | 349 | 91 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
COG5081 | COG5081 | 5.0e-27 | 13 | 147 | 135 | + Predicted membrane protein [Function unknown] | ||
cd10320 | RGL4_N | 1.0e-42 | 262 | 445 | 184 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 1.0e-44 | 603 | 790 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam04061 | ORMDL | 2.0e-63 | 15 | 147 | 133 | + ORMDL family. Evidence form suggests that ORMDLs are involved in protein folding in the ER. Orm proteins have been identified as negative regulators of sphingolipid synthesis that form a conserved complex with serine palmitoyltransferase, the first and rate-limiting enzyme in sphingolipid production. This novel and conserved protein complex, has been termed the SPOTS complex (serine palmitoyltransferase, Orm1/2, Tsc3, and Sac1). |
Gene Ontology | |
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GO Term | Description |
GO:0016021 | integral to membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002301113.1 | 0.000000002 | 163 | 262 | 8 | 100 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301113.1 | 0 | 259 | 796 | 157 | 680 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527356.1 | 0 | 259 | 792 | 226 | 746 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527356.1 | 2e-24 | 260 | 349 | 39 | 128 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527357.1 | 0 | 208 | 792 | 2 | 634 | lyase, putative [Ricinus communis] |