Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10030463 |
Family | AA3 |
Protein Properties | Length: 500 Molecular Weight: 54223 Isoelectric Point: 7.2756 |
Chromosome | Chromosome/Scaffold: 917 Start: 241651 End: 243566 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 44 | 496 | 0 |
AGRSFDYIVVGGGAAGCPLAATLSEKFSVLLIERGGSPYGNPWITEKRFFGLPLLQTDEFSSVSQSFTCKEGIANHRGRVLGGSTAINGGFYGRASDRFV TKSGWDKQLVKESYEWIESEIVTRKPELTIWKAAVKSGLLESGHTSADLLQAGRLENIIVLLNATVKSVIFNKGESNLTIARGIQFITSNGEGDRTYEAY LNQPETPTSSSLGDVILSAGALGSPQILLLSDIGPKPHLNQLNIPVVLESNQVGHDVKDDLSVSIRVELNPKHQVPDLAPLAGIRKGSDLIIESLTVPFG LNCTGIVVVAAKLTFQISKRKLELNSTDPRKNPQVSYNYLESEKDMDVCVEMTQVLNKVASSRAVERFLGNVAQVNLTRNHDELRTFCRSKLRSFYHYHG GCGVGSVVDQDYRVLGVEGLRVVDGSTFLESPGTNPMAAVLMLGRHQGIKILA |
Full Sequence |
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Protein Sequence Length: 500 Download |
MGINGKLLTA LTLLIILLFN SCHSFAQPRG VKFPYMTSNV DEVAGRSFDY IVVGGGAAGC 60 PLAATLSEKF SVLLIERGGS PYGNPWITEK RFFGLPLLQT DEFSSVSQSF TCKEGIANHR 120 GRVLGGSTAI NGGFYGRASD RFVTKSGWDK QLVKESYEWI ESEIVTRKPE LTIWKAAVKS 180 GLLESGHTSA DLLQAGRLEN IIVLLNATVK SVIFNKGESN LTIARGIQFI TSNGEGDRTY 240 EAYLNQPETP TSSSLGDVIL SAGALGSPQI LLLSDIGPKP HLNQLNIPVV LESNQVGHDV 300 KDDLSVSIRV ELNPKHQVPD LAPLAGIRKG SDLIIESLTV PFGLNCTGIV VVAAKLTFQI 360 SKRKLELNST DPRKNPQVSY NYLESEKDMD VCVEMTQVLN KVASSRAVER FLGNVAQVNL 420 TRNHDELRTF CRSKLRSFYH YHGGCGVGSV VDQDYRVLGV EGLRVVDGST FLESPGTNPM 480 AAVLMLGRHQ GIKILAEGE* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG2303 | BetA | 1.0e-25 | 235 | 497 | 309 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
pfam05199 | GMC_oxred_C | 2.0e-26 | 365 | 487 | 130 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
TIGR01810 | betA | 3.0e-34 | 49 | 487 | 540 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
TIGR03970 | Rv0697 | 3.0e-36 | 49 | 487 | 496 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
PLN02785 | PLN02785 | 2.0e-123 | 32 | 497 | 557 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_563939.1 | 0 | 29 | 497 | 18 | 502 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
RefSeq | XP_002312249.1 | 0 | 36 | 497 | 1 | 486 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315047.1 | 0 | 30 | 497 | 1 | 489 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315048.1 | 0 | 11 | 499 | 13 | 527 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002522448.1 | 0 | 3 | 499 | 7 | 526 | glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3gdp_B | 0 | 17 | 497 | 1 | 516 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 3gdp_A | 0 | 17 | 497 | 1 | 516 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 3gdn_B | 0 | 17 | 497 | 1 | 516 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 3gdn_A | 0 | 17 | 497 | 1 | 516 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 1ju2_B | 0 | 17 | 497 | 1 | 516 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |