Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10030602 |
Family | GH28 |
Protein Properties | Length: 499 Molecular Weight: 53858.7 Isoelectric Point: 4.8725 |
Chromosome | Chromosome/Scaffold: 917 Start: 942829 End: 944782 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 83 | 448 | 0 |
WSTACNASSNAVFLVPLGRQYLVAATKFKGPCGDKLIVQIDGTIIAPDEPESWDQDLARLWLDFSKLSGVVFQGNGVIDGSGSKWWAASCKKNKTNASSL ISSTIFYSLYINRSKILHWFLSLCFMQPCKAAPTAITIDSSNGVKVKGLTIKNSQQMNFVISKSSSVRVSDVLVSAPGDSPNTDGIHITQSSDVVLQNCK IGTGDDCVSIVNGSSNIRMKRLYCGPGHGISIGSLGQDNSTGIVTGVILDTALLRNTTNGLRIKTWQGGNGHVRGVRYDNVQMENVANPIIIDQFYCDSP NACQNQTEAVEISKIMYRNITGTSKSAKAMKFACSDTVPCSDIVLINVNLEGRDGTVETYCNSAEG |
Full Sequence |
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Protein Sequence Length: 499 Download |
MDRLFFIYFI GLLLVSHGVA GNIVYDELAT LEKLETLEEV DDDDCDVTSW RSERSGKVLV 60 NVDSFGAAGD GVSDDTQAFV KAWSTACNAS SNAVFLVPLG RQYLVAATKF KGPCGDKLIV 120 QIDGTIIAPD EPESWDQDLA RLWLDFSKLS GVVFQGNGVI DGSGSKWWAA SCKKNKTNAS 180 SLISSTIFYS LYINRSKILH WFLSLCFMQP CKAAPTAITI DSSNGVKVKG LTIKNSQQMN 240 FVISKSSSVR VSDVLVSAPG DSPNTDGIHI TQSSDVVLQN CKIGTGDDCV SIVNGSSNIR 300 MKRLYCGPGH GISIGSLGQD NSTGIVTGVI LDTALLRNTT NGLRIKTWQG GNGHVRGVRY 360 DNVQMENVAN PIIIDQFYCD SPNACQNQTE AVEISKIMYR NITGTSKSAK AMKFACSDTV 420 PCSDIVLINV NLEGRDGTVE TYCNSAEGSA YGIVRPSVDC LSSHDKDYAS TSNPQFIRDM 480 NIVEVSEATS QDFVHTEL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 2.0e-76 | 55 | 462 | 410 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-86 | 87 | 450 | 364 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 1.0e-87 | 60 | 475 | 423 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 2.0e-102 | 60 | 456 | 399 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-126 | 54 | 463 | 411 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_173760.2 | 0 | 14 | 465 | 16 | 440 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002299032.1 | 0 | 1 | 498 | 1 | 469 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317091.1 | 0 | 31 | 498 | 2 | 447 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328587.1 | 0 | 1 | 468 | 1 | 440 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525360.1 | 0 | 1 | 498 | 1 | 510 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 4e-18 | 217 | 443 | 105 | 328 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 4e-18 | 217 | 443 | 105 | 328 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 4e-18 | 217 | 443 | 105 | 328 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 4e-18 | 217 | 443 | 105 | 328 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 4e-18 | 217 | 443 | 105 | 328 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |