Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10030604 |
Family | GH28 |
Protein Properties | Length: 534 Molecular Weight: 58120.1 Isoelectric Point: 8.6836 |
Chromosome | Chromosome/Scaffold: 917 Start: 949257 End: 952270 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 143 | 487 | 0 |
AACKVANSIMLVPEEYRFLVGPISFSGPYCQQGITFQLDGTIVAPTNSYVWGKGLLQWLEFSKLAQITIQGKGTVDGSGSVWWQDNPLDVPEDGLMQQII LLNNTLEKQPPRTVRSELSSKMPSIKPTALRFYGSVNVTVTGITIQNSPQCHLKFDNCIGVMVHHIRVSSPGDSPNTDGVHLQNSRDVLIHSSLLACGDD CISIQTGCSNVYIHDVNCGPGHGISIGSLGRDNARACVSNVTVKNVNMHNTMTGVRIKTWQGGSGSVYGIMFSNIQVSEVQFPIVIDQYYCDKSTCKNQS SAVSVSGINYEQIKGTYTVKPVHFACSDNLPCADISLTSIELKPL |
Full Sequence |
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Protein Sequence Length: 534 Download |
MKGVNCRSFT FMVLVAFLVW SASFDTCIAR RGRHWRQNRG FSASLTKKKV KSHGSSHLSN 60 NHYNGGRSSK SPKKSLSPKA PNSPTPSSPM KLPKHVPVAS PEPPSPSTSR PHADSLTFNV 120 VTFGAKGDEK SDDTKAFQAT WAAACKVANS IMLVPEEYRF LVGPISFSGP YCQQGITFQL 180 DGTIVAPTNS YVWGKGLLQW LEFSKLAQIT IQGKGTVDGS GSVWWQDNPL DVPEDGLMQQ 240 IILLNNTLEK QPPRTVRSEL SSKMPSIKPT ALRFYGSVNV TVTGITIQNS PQCHLKFDNC 300 IGVMVHHIRV SSPGDSPNTD GVHLQNSRDV LIHSSLLACG DDCISIQTGC SNVYIHDVNC 360 GPGHGISIGS LGRDNARACV SNVTVKNVNM HNTMTGVRIK TWQGGSGSVY GIMFSNIQVS 420 EVQFPIVIDQ YYCDKSTCKN QSSAVSVSGI NYEQIKGTYT VKPVHFACSD NLPCADISLT 480 SIELKPLQEK FHMYDPFCWN TFGELNTPAV PPIGCLQIGK PTSNRPQTDR DSC* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 3.0e-75 | 113 | 485 | 379 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 3.0e-76 | 118 | 484 | 372 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 4.0e-80 | 150 | 484 | 336 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 5.0e-88 | 117 | 485 | 374 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-102 | 118 | 512 | 401 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95830.1 | 0 | 1 | 533 | 4 | 516 | unknown [Populus trichocarpa] |
RefSeq | NP_563875.6 | 0 | 2 | 533 | 5 | 532 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002266600.1 | 0 | 1 | 533 | 1 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311773.1 | 0 | 1 | 533 | 4 | 517 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525361.1 | 0 | 1 | 533 | 1 | 519 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-22 | 194 | 435 | 96 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 6e-18 | 268 | 484 | 99 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 6e-18 | 268 | 484 | 99 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 6e-18 | 268 | 484 | 99 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 6e-18 | 268 | 484 | 99 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |