Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10030670 |
Family | PL1 |
Protein Properties | Length: 462 Molecular Weight: 51846.8 Isoelectric Point: 8.7525 |
Chromosome | Chromosome/Scaffold: 373 Start: 18400 End: 20154 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 173 | 379 | 0 |
VIQTEPLWIIFAHDMNIKLNAELLMTGNKTIDGRGANVHIAYGAGITVQFVENVIIHGIHVHHIVPTDGGMIRDSVDHYGLRTKSDGDGISIFGSTNVWI DHVSMSQCTDGLIDAIQGSTAITISNSHFTHHNDAILLGASDSFSGDQFMQVTVAYNHFGQELVQRMPRCRWGFFHVVNNDYTHWRLYAIGGSRHPTIIS QGNRFIA |
Full Sequence |
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Protein Sequence Length: 462 Download |
MGRLVFILFF SFATIIPCLR AHDATKIKPQ HDEVWQKRAE QAKRNLMAAY VPNPLDSDDD 60 DSDPPSSKSG SSRKSLSGDE DVGRKEGTMK YKTRRSLKQG KRKYLGPCAT TNPMDECWRC 120 KEDWATNRRQ MAKCALGFGR KTTGGIDGRL YVVTDNSDDD FINPVPGTLR YAVIQTEPLW 180 IIFAHDMNIK LNAELLMTGN KTIDGRGANV HIAYGAGITV QFVENVIIHG IHVHHIVPTD 240 GGMIRDSVDH YGLRTKSDGD GISIFGSTNV WIDHVSMSQC TDGLIDAIQG STAITISNSH 300 FTHHNDAILL GASDSFSGDQ FMQVTVAYNH FGQELVQRMP RCRWGFFHVV NNDYTHWRLY 360 AIGGSRHPTI ISQGNRFIAP PEKELKQVTK RDYAAESEWR NWIWRSEGDV FMNEAFFIES 420 GQPNLKTRPS KKFMIKPQPG SLATKMTRFA GALECKPKQK C* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 0.0005 | 32 | 54 | 23 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 7.0e-24 | 142 | 377 | 249 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 4.0e-61 | 176 | 377 | 210 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-72 | 186 | 381 | 207 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM60924.1 | 0 | 6 | 461 | 9 | 475 | putative pectate lyase [Arabidopsis thaliana] |
EMBL | CAN79927.1 | 0 | 14 | 461 | 19 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 14 | 461 | 48 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002306040.1 | 0 | 1 | 461 | 3 | 432 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002323835.1 | 0 | 32 | 461 | 29 | 452 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 112 | 453 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 112 | 453 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 8e-17 | 194 | 437 | 63 | 314 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 2e-16 | 195 | 377 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.000000000000005 | 190 | 385 | 71 | 284 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |