Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10030886 |
Family | GH28 |
Protein Properties | Length: 529 Molecular Weight: 57545.4 Isoelectric Point: 8.7409 |
Chromosome | Chromosome/Scaffold: 373 Start: 1054424 End: 1057159 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 138 | 482 | 0 |
AACKVANSIMLVPEQHRFLVGPISFSGPYCQQGITFQLDGTIVAPTNSYVWGKGLLQWLEFSKLAQITIQGKGTIDGSGSVWWQDNPIDVLEDGLTQQII LLNSTLEKQPPRTVRSELSSKMPSIKPTALRFYGSVNVTVTGITIQNSPQCHLKFDNCIGVMVHHIRVSSPGDSPNTDGVHLQNSRDVLIHSSLLACGDD CISIQTGCSNVYIHDVNCGPGHGISIGSLGRDNARACVSNVTVKNVNMHNTMTGVRIKTWQGGSGSVYGIMFSNIQVSEVQFPIVIDQYYCDKATCKNQS SAVSVSGINYEQIKGTYTVKPVHFACSDNLPCADISLTSIELKPL |
Full Sequence |
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Protein Sequence Length: 529 Download |
MEGVNRRSFT FMVLVAFLVW SASFDTCIAR RGKHWRQNRG FSASLTKKKV KSHGSSHHSN 60 NHYNGGRSSK SPKKAPSPIA PNSPSPMKPP KHVPVASPEP PSPTRPHADS LTFNVVNFGA 120 KGDGKSDDTK AFQGAWAAAC KVANSIMLVP EQHRFLVGPI SFSGPYCQQG ITFQLDGTIV 180 APTNSYVWGK GLLQWLEFSK LAQITIQGKG TIDGSGSVWW QDNPIDVLED GLTQQIILLN 240 STLEKQPPRT VRSELSSKMP SIKPTALRFY GSVNVTVTGI TIQNSPQCHL KFDNCIGVMV 300 HHIRVSSPGD SPNTDGVHLQ NSRDVLIHSS LLACGDDCIS IQTGCSNVYI HDVNCGPGHG 360 ISIGSLGRDN ARACVSNVTV KNVNMHNTMT GVRIKTWQGG SGSVYGIMFS NIQVSEVQFP 420 IVIDQYYCDK ATCKNQSSAV SVSGINYEQI KGTYTVKPVH FACSDNLPCA DISLTSIELK 480 PLQEKFHMYD PFCWNTFGEL NTPAVPPIQC LQLGKPTSNR PQTDRDSC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 6.0e-78 | 95 | 480 | 394 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 8.0e-80 | 113 | 479 | 372 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 8.0e-82 | 145 | 479 | 336 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-91 | 112 | 480 | 373 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-106 | 98 | 507 | 417 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95830.1 | 0 | 1 | 528 | 4 | 516 | unknown [Populus trichocarpa] |
RefSeq | NP_563875.6 | 0 | 7 | 528 | 10 | 532 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002266600.1 | 0 | 1 | 528 | 1 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311773.1 | 0 | 1 | 528 | 4 | 517 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525361.1 | 0 | 1 | 528 | 1 | 519 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-22 | 155 | 430 | 52 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 1e-17 | 263 | 479 | 99 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-17 | 263 | 479 | 99 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-17 | 263 | 479 | 99 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-17 | 263 | 479 | 99 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |