| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10031080 |
| Family | AA7 |
| Protein Properties | Length: 324 Molecular Weight: 35456.2 Isoelectric Point: 8.3475 |
| Chromosome | Chromosome/Scaffold: 261 Start: 1068147 End: 1069118 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| AA7 | 62 | 249 | 0 |
| SGGHDYEGRSYTSDHSPFFILDMCNLRSIHVDIQSQTAWVECGATLGEFFHAIAGKSPTHAFPAGVCPTVGVGRHGGYGNLMRKYGLSIDHIVDAKGNVL NRESMREDLFWAIRGGGATFGVFLSYKVNLVNVPEVVTVFRIWRTLEDNATEMVYTWQKVAPTASVDLFIRLVLDVVTTSVKKHKTAR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 324 Download |
| MPTSTTSASP PHQPQSPSSS SPHPTIPTSV QPSSPPPPTP TSPSRTGAAR APPHVDNRNT 60 ASGGHDYEGR SYTSDHSPFF ILDMCNLRSI HVDIQSQTAW VECGATLGEF FHAIAGKSPT 120 HAFPAGVCPT VGVGRHGGYG NLMRKYGLSI DHIVDAKGNV LNRESMREDL FWAIRGGGAT 180 FGVFLSYKVN LVNVPEVVTV FRIWRTLEDN ATEMVYTWQK VAPTASVDLF IRLVLDVVTT 240 SVKKHKTARA TFIGMFLGRS VRLMSIMREK FLEVGLTASD CVEMSWINTV AFWADKSEVT 300 KTRTEMEEVM WSGSREGRRD PTT* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG0277 | GlcD | 5.0e-5 | 81 | 183 | 118 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| pfam01565 | FAD_binding_4 | 4.0e-10 | 62 | 162 | 110 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN60572.1 | 0 | 28 | 295 | 73 | 350 | hypothetical protein [Vitis vinifera] |
| EMBL | CAN80091.1 | 0 | 62 | 295 | 109 | 350 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002269462.1 | 0 | 62 | 295 | 109 | 350 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002270181.1 | 0 | 62 | 295 | 109 | 350 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002523152.1 | 0 | 4 | 295 | 15 | 329 | Reticuline oxidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3tsj_B | 0 | 27 | 292 | 48 | 313 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3tsj_A | 0 | 27 | 292 | 48 | 313 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3tsh_A | 0 | 27 | 292 | 48 | 313 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
| PDB | 4dns_B | 0 | 62 | 292 | 85 | 315 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 0 | 62 | 292 | 85 | 315 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| JK988562 | 238 | 62 | 290 | 0 |
| GR097526 | 247 | 66 | 303 | 0 |
| GT085022 | 242 | 62 | 293 | 0 |
| GW865097 | 241 | 76 | 306 | 0 |
| EG693474 | 184 | 62 | 237 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |