y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10031443 |
Family | CBM43 |
Protein Properties | Length: 423 Molecular Weight: 42333.4 Isoelectric Point: 6.4565 |
Chromosome | Chromosome/Scaffold: 863 Start: 360434 End: 362358 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 215 | 296 | 1.2e-33 |
WCVAKGGVSAASLQAALDYACGTGGVDCSQIQQGAACYNPNTLQNHASFAFNNYYQKNPVATSCDFGGTAVVVSNNPSSGTC |
Full Sequence |
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Protein Sequence Length: 423 Download |
MVVSSQLLLL FLLCSSLLTL PAAGTGTLVG LFYNGGENAA TSSRILSFLP SSQIQGPRST 60 SWEFHQLFPS SRRELSSKVE AFVNKDGVTI PTTTPTIITV PATIPTPTTA TNNPPVTPLP 120 LPTTIPPTNP AATTPPVTIP GGVSQQPVTN PATTYPVPST GTVPNPAGTV PPPAGTVPNP 180 VVAPPAVTNP VVAPPAVTNP PAGTTNAPGV SWQSWCVAKG GVSAASLQAA LDYACGTGGV 240 DCSQIQQGAA CYNPNTLQNH ASFAFNNYYQ KNPVATSCDF GGTAVVVSNN PSSGTCTYPS 300 SSSSSSSSSS TSSPPTTTAT SPLTPTSPTP STSTTNPVTT NPTTISSPSG NGTSGTSVTP 360 PSVLNSSSSS PTAGTANVFG FDNPPGVTTE GPMASDSAAL RPLIRCVVLA VCFIAGAVVF 420 YV* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 3.0e-19 | 214 | 285 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-29 | 214 | 290 | 78 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN65737.1 | 0 | 22 | 422 | 150 | 519 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002276666.1 | 0 | 58 | 422 | 282 | 615 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002319461.1 | 0 | 25 | 420 | 256 | 613 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002463588.1 | 1e-39 | 88 | 302 | 277 | 519 | hypothetical protein SORBIDRAFT_01g002540 [Sorghum bicolor] |
RefSeq | XP_002512573.1 | 0 | 10 | 420 | 27 | 404 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 1e-17 | 214 | 303 | 12 | 101 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |