| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10031867 |
| Family | PL1 |
| Protein Properties | Length: 255 Molecular Weight: 28392.1 Isoelectric Point: 7.0224 |
| Chromosome | Chromosome/Scaffold: 783 Start: 1098540 End: 1099824 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 2 | 182 | 0 |
| EIKLQKPLLISSYTAFDGRGVDVHIQMMHVSLFTRLAMSLSMGYTSITEPWKVLPLGAMDGDAIRLVTAHKVWIDHNTLYSCQDGLLDMTHGSTNVTISN DWFRNQDKVMLLGHDDGYVRDKGMKVTVLLNHFGPNCNQRMPRVRHGYAHVANNLYQGWTQYAIGGSMNPIIKSESNYFIA | |||
| Full Sequence |
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| Protein Sequence Length: 255 Download |
| MEIKLQKPLL ISSYTAFDGR GVDVHIQMMH VSLFTRLAMS LSMGYTSITE PWKVLPLGAM 60 DGDAIRLVTA HKVWIDHNTL YSCQDGLLDM THGSTNVTIS NDWFRNQDKV MLLGHDDGYV 120 RDKGMKVTVL LNHFGPNCNQ RMPRVRHGYA HVANNLYQGW TQYAIGGSMN PIIKSESNYF 180 IAPTGRKEVT WRNGVDGKDE PWSFYSVNDY FENGANFDET GEGGAKPNYD SDQKFKVAVA 240 QTVKNLTSSA GALA* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 7.0e-24 | 63 | 252 | 211 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 8.0e-52 | 6 | 180 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 5.0e-55 | 1 | 183 | 202 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 1 | 253 | 48 | 312 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 1 | 253 | 97 | 361 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 1 | 253 | 79 | 346 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 1 | 253 | 79 | 344 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 1 | 188 | 107 | 305 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 1 | 253 | 76 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 1 | 253 | 76 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 0.000000000000003 | 61 | 182 | 115 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1jta_A | 0.000000000000004 | 63 | 223 | 144 | 327 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1jrg_B | 0.000000000000004 | 63 | 223 | 144 | 327 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DT575750 | 213 | 43 | 253 | 0 |
| FG478648 | 190 | 67 | 254 | 0 |
| FG474249 | 190 | 67 | 254 | 0 |
| FD757999 | 214 | 7 | 209 | 0 |
| FG468635 | 174 | 61 | 233 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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