y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10032347 |
Family | AA3 |
Protein Properties | Length: 300 Molecular Weight: 32576.5 Isoelectric Point: 9.4532 |
Chromosome | Chromosome/Scaffold: 291 Start: 843954 End: 844933 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 5 | 295 | 2.8026e-45 |
ENIIVLLNATVKSVIFNNGKSEKTTARGIRFISSHGTGDQTYEAYLKQPANRTCSSGEVILSAGALGSPQILLLSGIGPKPHLNRLNIPLVLESNHVGLE VQDNPGISILVGSKPGQKLPDPPQVAGITKGFNFIIQGVVGPVSFNATRNRISIKLAFPESKGKLELNSTDPRMNPEVSYKYLDTERDMDGCVEMVKLAM TVAKYLSRETNLVSNPGELRTYCRKNVVSYFHYHGGCVVGSVVDEDYRVVGVDGLRVVDGSTFFEAPGTNPMATVLMLGRYQGIKILARRN |
Full Sequence |
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Protein Sequence Length: 300 Download |
MGRHENIIVL LNATVKSVIF NNGKSEKTTA RGIRFISSHG TGDQTYEAYL KQPANRTCSS 60 GEVILSAGAL GSPQILLLSG IGPKPHLNRL NIPLVLESNH VGLEVQDNPG ISILVGSKPG 120 QKLPDPPQVA GITKGFNFII QGVVGPVSFN ATRNRISIKL AFPESKGKLE LNSTDPRMNP 180 EVSYKYLDTE RDMDGCVEMV KLAMTVAKYL SRETNLVSNP GELRTYCRKN VVSYFHYHGG 240 CVVGSVVDED YRVVGVDGLR VVDGSTFFEA PGTNPMATVL MLGRYQGIKI LARRNKCEK* 300 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK02106 | PRK02106 | 8.0e-16 | 1 | 107 | 107 | + choline dehydrogenase; Validated | ||
TIGR03970 | Rv0697 | 2.0e-16 | 28 | 283 | 275 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
pfam05199 | GMC_oxred_C | 6.0e-19 | 163 | 283 | 136 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
COG2303 | BetA | 3.0e-25 | 3 | 294 | 340 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 4.0e-58 | 2 | 294 | 363 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_563939.1 | 0 | 2 | 291 | 212 | 500 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
RefSeq | XP_002312249.1 | 0 | 2 | 298 | 188 | 491 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315047.1 | 0 | 1 | 291 | 193 | 487 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315048.1 | 0 | 2 | 294 | 225 | 526 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002522448.1 | 0 | 2 | 294 | 225 | 525 | glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ju2_B | 0 | 2 | 298 | 204 | 521 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 1ju2_A | 0 | 2 | 298 | 204 | 521 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdp_B | 0 | 2 | 298 | 204 | 521 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdp_A | 0 | 2 | 298 | 204 | 521 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdn_B | 0 | 2 | 298 | 204 | 521 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FF535424 | 215 | 43 | 249 | 0 |
HO808060 | 248 | 57 | 295 | 0 |
EX098969 | 255 | 1 | 247 | 0 |
FG850079 | 222 | 36 | 249 | 0 |
JG214690 | 169 | 138 | 296 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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