Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10032374 |
Family | GH28 |
Protein Properties | Length: 452 Molecular Weight: 49051.8 Isoelectric Point: 6.4332 |
Chromosome | Chromosome/Scaffold: 291 Start: 980720 End: 983226 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 75 | 424 | 0 |
RGGTLLYIPPGEYLTESFNLTSHMTLYLAKGAIIKATQETSNWPLIAPLPSYGRGRELPGGRYMSFIHADGVRDVIITGENGTIDGQGDVWWNMWRQRTL EYTRPNLIEFINSTDIIISNVIFKDSPFWNIHPVYSSNIVIRYVTILAPRDSPNTDGVDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYARPSSGI TIRRITGSSPFAGIAVGSETSGGVENVLAENINLYNMGVGLHVKTNQGRGGFIRNITFAHVYMEEVRTGIKIAGDVGDHPDDGFDPNALPVVKGLTFHSV WGEKVLQPGLIRGLKDSPFTDVCLSNINLHSVLPPATRTPTPLWKCTDVK |
Full Sequence |
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Protein Sequence Length: 452 Download |
MQRLLLLALF SFCCCAGVFL TGSAAEVMTC SGIVPMRHRS DKISIADYGG VGDGKAINTK 60 AFKEAIYRIE HLKRRGGTLL YIPPGEYLTE SFNLTSHMTL YLAKGAIIKA TQETSNWPLI 120 APLPSYGRGR ELPGGRYMSF IHADGVRDVI ITGENGTIDG QGDVWWNMWR QRTLEYTRPN 180 LIEFINSTDI IISNVIFKDS PFWNIHPVYS SNIVIRYVTI LAPRDSPNTD GVDPDSSSNV 240 CIEDSYISTG DDLVAVKSGW DEYGIAYARP SSGITIRRIT GSSPFAGIAV GSETSGGVEN 300 VLAENINLYN MGVGLHVKTN QGRGGFIRNI TFAHVYMEEV RTGIKIAGDV GDHPDDGFDP 360 NALPVVKGLT FHSVWGEKVL QPGLIRGLKD SPFTDVCLSN INLHSVLPPA TRTPTPLWKC 420 TDVKGASVQV SPSPCSELAS TIPSGSCSDH F* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 5.0e-25 | 37 | 451 | 437 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-26 | 40 | 446 | 420 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 1.0e-27 | 43 | 352 | 321 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-31 | 156 | 424 | 275 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 9.0e-54 | 44 | 369 | 356 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACC91250.1 | 0 | 5 | 451 | 4 | 444 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
EMBL | CBI34471.1 | 0 | 1 | 448 | 1 | 444 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_194113.1 | 0 | 5 | 451 | 4 | 444 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002304552.1 | 0 | 36 | 451 | 1 | 412 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509949.1 | 0 | 24 | 450 | 23 | 445 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 2e-39 | 42 | 400 | 27 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 2e-39 | 42 | 400 | 27 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 2e-39 | 42 | 400 | 27 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 2e-39 | 42 | 400 | 27 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 4e-18 | 87 | 340 | 52 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |