| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10032641 |
| Family | AA3 |
| Protein Properties | Length: 538 Molecular Weight: 58048.1 Isoelectric Point: 9.1317 |
| Chromosome | Chromosome/Scaffold: 140 Start: 1162649 End: 1165280 |
| Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| AA3 | 50 | 526 | 0 |
| LFDYIVVGGGAAGCPIAATLSEKFSVLLIERGGSPYGNPWITNKRFYGFPLLQTDEFSSVSQSFTSKEGVANLRGRVLGGSTAINGGFYSRASDEYVRTV GWDEELVKKSYEWVESKIVTKPVLTTWQAASRSGFLQAGILPDNGFTWEHIQGTKVGGSIFDKSGKRHTSADLLQAGRPENIIVLLNATVKSVIFNNGES NKTIACAIQFISSNGGGDQTYEAYLNQPENPTGSSSSSSGDVILSAGAIGSPQILLLSGIGPKPHLNQLNIPIVLESNRVGQEAKDNPSVSILVDSKPEY RVPDTTQVAGITKGSKFIIESLILPFSFNTTRVVIAIKIAAPKSKGKLELNSTDPRKNPQVSYNYLESEKDMDGCVEMSKLMNKVASSQAVETFPGNVAQ ANLTTNPDELRTLCRRNVRTFYHYHGGCGVGSVVGQDYRVLGVQGLRVVDGSTFLESPGTNPMATLLMLGRYQGLKI | |||
| Full Sequence |
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| Protein Sequence Length: 538 Download |
| MRLLAARILL LLLLPLLLLL HSSHSAGQPR GKNPKLPYMT SNVNEVAGKL FDYIVVGGGA 60 AGCPIAATLS EKFSVLLIER GGSPYGNPWI TNKRFYGFPL LQTDEFSSVS QSFTSKEGVA 120 NLRGRVLGGS TAINGGFYSR ASDEYVRTVG WDEELVKKSY EWVESKIVTK PVLTTWQAAS 180 RSGFLQAGIL PDNGFTWEHI QGTKVGGSIF DKSGKRHTSA DLLQAGRPEN IIVLLNATVK 240 SVIFNNGESN KTIACAIQFI SSNGGGDQTY EAYLNQPENP TGSSSSSSGD VILSAGAIGS 300 PQILLLSGIG PKPHLNQLNI PIVLESNRVG QEAKDNPSVS ILVDSKPEYR VPDTTQVAGI 360 TKGSKFIIES LILPFSFNTT RVVIAIKIAA PKSKGKLELN STDPRKNPQV SYNYLESEKD 420 MDGCVEMSKL MNKVASSQAV ETFPGNVAQA NLTTNPDELR TLCRRNVRTF YHYHGGCGVG 480 SVVGQDYRVL GVQGLRVVDG STFLESPGTN PMATLLMLGR YQGLKILDER EKNGHHQ* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam05199 | GMC_oxred_C | 1.0e-30 | 391 | 519 | 136 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
| TIGR01810 | betA | 4.0e-33 | 52 | 519 | 548 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
| TIGR03970 | Rv0697 | 5.0e-36 | 52 | 519 | 520 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
| COG2303 | BetA | 4.0e-42 | 51 | 520 | 548 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
| PLN02785 | PLN02785 | 1.0e-162 | 51 | 530 | 541 | + Protein HOTHEAD | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_563939.1 | 0 | 35 | 530 | 21 | 503 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002312249.1 | 0 | 39 | 537 | 1 | 491 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002315047.1 | 0 | 31 | 529 | 1 | 489 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002315048.1 | 0 | 11 | 531 | 12 | 527 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002522448.1 | 0 | 11 | 531 | 12 | 526 | glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3red_L | 0 | 51 | 530 | 27 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
| PDB | 3red_K | 0 | 51 | 530 | 27 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
| PDB | 3red_J | 0 | 51 | 530 | 27 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
| PDB | 3red_I | 0 | 51 | 530 | 27 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
| PDB | 3red_H | 0 | 51 | 530 | 27 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
