| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10032829 |
| Family | CBM45 |
| Protein Properties | Length: 1326 Molecular Weight: 149513 Isoelectric Point: 8.5687 |
| Chromosome | Chromosome/Scaffold: 127 Start: 673063 End: 682668 |
| Description | phosphoglucan, water dikinase |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM45 | 323 | 401 | 4.7e-21 |
| LHWGISKLGSAEWLAPPSGILPENSKLIPGACQTYFTEIATSKGFFQVVDINVRQQKLEGIQFVIWAGGSWIKNNGANF | |||
| Full Sequence |
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| Protein Sequence Length: 1326 Download |
| MATFELYRRS TIGMCLTETL DEMVSSGTLS PELAIQVLVQ FDKSMTDALD TQVKSKVSIK 60 INVSGSLSGR NVKVELQLNN CTRTWVLHWG CTFLANNGWF IPSDGTNSYK PGALQTPFTK 120 SGDLYVITIE LRDPKVVAIE FVLKDGSHDR WLKLNNGNFR VELPEHDEIP KDVIERRAYQ 180 IWERQGRLNS SSQQQKQNYD DALRELQDQL SRGLSLDELR NIGRSPNHSR EESKDHQTIS 240 HYHKRHDVGQ WLHKPLGSNK SINHRQVSVL MDLVEKSYAA DNVVSRQSYS VGNNSELVVL 300 VTLTQGGDIH VLVAMNIKGS IVLHWGISKL GSAEWLAPPS GILPENSKLI PGACQTYFTE 360 IATSKGFFQV VDINVRQQKL EGIQFVIWAG GSWIKNNGAN FSVNLIGINV VGDKKGIINW 420 LLDEIAHREK EAERSLMHRF NIATELTDRC KVEGELGLVG ILVWLRFMVC RYLAWNKNYN 480 VKPREISEAQ DRFTNLLQRI YLSHPSEREI VRLIMSCVGR GGKGDVGQRI RDEILVIQRN 540 NECKTGMMEE WHQKLHNNSS PDDVIICQAL LNYVTSGFKR DVYWKTLIAN GLTKEKLASY 600 DRPIISEPSF RNNAKEDLIR DLTMYLKTLK AVHSGVDLES AIESCVGPPS KGHYLGSIEE 660 RDACIGGLTS KLQESLNFVR SHVADENIAP LMEKLVESRV ELRPYLLTTH GKAKDMLFLD 720 LALDSTVRTT MERKLKDLSF VQPPEFSFYI TLVLENLCLS TINNEDLIYC TMDWYRVRDL 780 YKPNDAQWAL QAKAILDRLQ LILAERSISF YSKMQPTMQY LGRLLGIQKQ EIDTSTEELI 840 RAGSSATLSV LINRFNPVLR RVANLGCWQV ISPVEVRGFV ALVHDLTTIQ NKVYKKPTIM 900 IANKVTGEEE IPAGIVAVLT PDMPDVLSHV SIRARNSKVC LATCFDQNVL RNLKLKDGKV 960 MSIKIKSMSL IISEISVSDL SPHPSVFSSI LRRPSTTLKR KTFCGKYAIS VDEFSTETVG 1020 AKSCNIRFLR ERVSSWIKIP NSVALPFGTF EAVLSEDMNK DLASRILGLH KSISGGDLTK 1080 LKEIQNVVQQ MRAPIHLKNE LASKMRTSRI PWSSDQSEEK WNRAWEAIKQ VWASKWNERA 1140 FLSSRKANVN MDNLRMAVLI QEVVCADYAF VIHTKNPLSR DESEIYTEVV KGLGESLVSA 1200 HPGRALSFIT RKNNMKNPII TGYPSKNIGL YSKPSIIFRS DSNGEDLHGY AGAGLYDSVI 1260 LEKEDKIVLD YSTDRLVMDK AFQTWMLSKI AEAGKIIEAL YGSPQDIEGA VKDGVIYVVQ 1320 ARPQI* 1380 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02784 | PLN02784 | 2.0e-14 | 16 | 416 | 414 | + alpha-amylase | ||
| PRK06241 | PRK06241 | 1.0e-14 | 1126 | 1323 | 200 | + phosphoenolpyruvate synthase; Validated | ||
| cd10145 | TFIIA_gamma_N | 1.0e-18 | 4 | 49 | 46 | + Gamma subunit of transcription initiation factor IIA, N-terminal helical domain. Transcription factor II A (TFIIA) is one of the general transcription factors for RNA polymerase II. TFIIA increases the affinity of the TATA-binding protein (TBP) for DNA, in order to assemble the initiation complex. TFIIA also functions as an activator during development and differentiation, and is involved in transcription from TATA-less promoters. TFIIA is composed of more than one subunit in various organisms. Mammalian TFIIA large subunits (TFIIA alpha and beta), and the smaller subunit (TFIIA gamma) form a heterotrimer. TFIIA alpha and beta are encoded by a single TFIIA_alpha_beta gene and post-translationally processed and cleaved. TOA1 and TOA2 are the two subunits of Yeast TFIIA which correspond to Mammalian TFIIA_alpha_beta and TFIIA gamma, respectively. TOA1 and TOA2 form a heterodimeric protein complex. The TFIIA gamma subunit is highly conserved between humans, Drosophila and yeast and it is required for TFIIA function. The N-terminal domain of the gamma subunit forms a 4-helix bundle together with the alpha subunit. | ||
| pfam02268 | TFIIA_gamma_N | 9.0e-20 | 2 | 49 | 48 | + Transcription initiation factor IIA, gamma subunit, helical domain. Accurate transcription in vivo requires at least six general transcription initiation factors, in addition to RNA polymerase II. Transcription initiation factor IIA (TFIIA) is a multimeric protein which facilitates the binding of TFIID to the TATA box. The N-terminal domain of the gamma subunit is a 4 helix bundle. | ||
| pfam01326 | PPDK_N | 1.0e-31 | 1037 | 1324 | 313 | + Pyruvate phosphate dikinase, PEP/pyruvate binding domain. This enzyme catalyzes the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP). | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003702 | RNA polymerase II transcription factor activity |
| GO:0005524 | ATP binding |
| GO:0005672 | transcription factor TFIIA complex |
| GO:0006367 | transcription initiation from RNA polymerase II promoter |
| GO:0016301 | kinase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAO42141.1 | 0 | 52 | 1325 | 10 | 1278 | unknown protein [Arabidopsis thaliana] |
| EMBL | CAB45080.1 | 0 | 60 | 1325 | 31 | 1288 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_194176.3 | 0 | 52 | 1325 | 10 | 1278 | PWD (PHOSPHOGLUCAN, WATER DIKINASE); ATP binding / kinase [Arabidopsis thaliana] |
| Swiss-Prot | Q9STV0 | 0 | 52 | 1325 | 10 | 1278 | GWD2_ARATH RecName: Full=Alpha-glucan water dikinase 2; Flags: Precursor |
| RefSeq | XP_002527361.1 | 0 | 52 | 1325 | 13 | 1228 | alpha-glucan water dikinase, chloroplast precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nvp_D | 0.0000000007 | 4 | 68 | 2 | 62 | B Chain B, Human TfiiaTBPDNA COMPLEX |
| PDB | 1ytf_D | 0.00000009 | 4 | 63 | 6 | 65 | D Chain D, Yeast TfiiaTBPDNA COMPLEX |
| PDB | 1nh2_D | 0.00000009 | 4 | 63 | 6 | 65 | D Chain D, Yeast TfiiaTBPDNA COMPLEX |
| PDB | 1rm1_B | 0.00000009 | 4 | 63 | 7 | 66 | A Chain A, Structure Of A Yeast TfiiaTBPTATA-Box Dna Complex |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO777523 | 902 | 429 | 1326 | 0 |
| HO794398 | 753 | 578 | 1326 | 0 |
| HO794398 | 141 | 434 | 574 | 0 |
| HO644248 | 451 | 878 | 1326 | 0 |
| HO425530 | 453 | 886 | 1326 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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