Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10032875 |
Family | GH28 |
Protein Properties | Length: 415 Molecular Weight: 44090.6 Isoelectric Point: 6.767 |
Chromosome | Chromosome/Scaffold: 127 Start: 1326261 End: 1328816 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 71 | 401 | 0 |
AACRARSVNPMVVIPQGKIFLLQAIQFQGPCISNSIHVQVMGTLVAPPNLGSWKGRNTEKWLSFFNVRGLIVDGNGQIDGQGFNWWRSCRDISGCTRPTA LSFDGCDNLQISGLNHINSARNHVSIGGSNTVSISGLHISAPKDSPNTDGIDIAASKNVHISNTIIGTGDDCIAINTGCSNINITGVTCGPGHGISVGSL GINGENSQVDGVFVNHCTFIGTQNGVRIKTWQGGSGYARHISFSDIILNNAGNPIIIDQSYCYHCSNQGSAVEISDVSYTGIHGTSSDPIAIKFGCSAEH GCTNIQLAHINITSAHPPLTTSSQCSNAHGR |
Full Sequence |
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Protein Sequence Length: 415 Download |
MDLRIQLLVG IILVSMLPIM SCNEHNMANT EQKIVDRYEL NSVDVFNVMN YGAVGSGVRY 60 DTDAFVKTWN AACRARSVNP MVVIPQGKIF LLQAIQFQGP CISNSIHVQV MGTLVAPPNL 120 GSWKGRNTEK WLSFFNVRGL IVDGNGQIDG QGFNWWRSCR DISGCTRPTA LSFDGCDNLQ 180 ISGLNHINSA RNHVSIGGSN TVSISGLHIS APKDSPNTDG IDIAASKNVH ISNTIIGTGD 240 DCIAINTGCS NINITGVTCG PGHGISVGSL GINGENSQVD GVFVNHCTFI GTQNGVRIKT 300 WQGGSGYARH ISFSDIILNN AGNPIIIDQS YCYHCSNQGS AVEISDVSYT GIHGTSSDPI 360 AIKFGCSAEH GCTNIQLAHI NITSAHPPLT TSSQCSNAHG RSTDSIPKVD CLVS* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 2.0e-88 | 41 | 408 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 4.0e-90 | 36 | 399 | 372 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-103 | 32 | 412 | 388 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 8.0e-112 | 40 | 412 | 380 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 1.0e-112 | 46 | 412 | 370 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN62658.1 | 0 | 46 | 414 | 55 | 435 | hypothetical protein [Vitis vinifera] |
EMBL | CBI36306.1 | 0 | 46 | 413 | 124 | 494 | unnamed protein product [Vitis vinifera] |
EMBL | CBI36306.1 | 0.00008 | 340 | 409 | 22 | 90 | unnamed protein product [Vitis vinifera] |
EMBL | CBI36307.1 | 0 | 47 | 412 | 33 | 402 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266797.1 | 0 | 46 | 413 | 18 | 373 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 3e-23 | 147 | 397 | 79 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 3e-23 | 147 | 397 | 79 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 3e-23 | 147 | 397 | 79 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 3e-23 | 147 | 397 | 79 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 3e-23 | 147 | 397 | 79 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |