Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10033014 |
Family | GT5 |
Protein Properties | Length: 764 Molecular Weight: 84675.7 Isoelectric Point: 5.0832 |
Chromosome | Chromosome/Scaffold: 51 Start: 1234132 End: 1237736 |
Description | starch synthase 2 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 273 | 756 | 0 |
NVILVAAECAPWSKTGGLGDVAGSLPKALARRGHRVMVVAPRYGAYMESENTGIRKIYKVDGQDLEITYFQAYINGVDFVFIDGPLFRHIENNIYGGNRM DILKRMVLFCKAAVEVPWHVPCGGICYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQFTRSVLVIHNIAHQGRGPVDDFKYVDLPGNYIDLFKWYDPV GGEHFNIFAAGLKAADRVVTVSHGYAWELKTLEGGWGLHSIINENDWKLRGIVNGIDTQEWNPQNDVHLTSDGYANYSLETLETGKPKCKAALQKELGLP ERPDVPLIGFIGRLDNQKGVDLIAEAIPWMVEQDVQLVMLGTGRQDLEQMLRQFESQYGDKVRGWVGFSVKTAHRITAGADILLMPSRFEPCGLNQLYAM TYGTIPVVHAVGGLRDTVEPFDPFNESGLGWTFDSAEASKLIHALGNCLWTYREFKRSWEGLQRRGMEQDLSWDHAAQLYEEVL |
Full Sequence |
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Protein Sequence Length: 764 Download |
MAFAGSFPSL TEVIVETCPL FRCKKNQNGP KIPFFSCRLK ITPTNLGLSG GDRLSPRFKG 60 LRATGKDAEK NGDKSDDALQ ATIEKSKKVL AVQRDLLQQI AERRKLVSSI NESNLNPEAD 120 DESLLTNVEP TSASAKDASS LDDELATTIS GNEDGLHRKN LRPSGRFSTE NGTLQLNEPP 180 SIVSQVFTTN NVKGEDVNES TLREMNSSFD DIMAHVNDDT VSFLSTTSTI STINNMQPEY 240 VTESSPQVTN DVKGDSYVED AAPPPLAGPN VMNVILVAAE CAPWSKTGGL GDVAGSLPKA 300 LARRGHRVMV VAPRYGAYME SENTGIRKIY KVDGQDLEIT YFQAYINGVD FVFIDGPLFR 360 HIENNIYGGN RMDILKRMVL FCKAAVEVPW HVPCGGICYG DGNLVFIAND WHTALLPVYL 420 KAYYRDNGLM QFTRSVLVIH NIAHQGRGPV DDFKYVDLPG NYIDLFKWYD PVGGEHFNIF 480 AAGLKAADRV VTVSHGYAWE LKTLEGGWGL HSIINENDWK LRGIVNGIDT QEWNPQNDVH 540 LTSDGYANYS LETLETGKPK CKAALQKELG LPERPDVPLI GFIGRLDNQK GVDLIAEAIP 600 WMVEQDVQLV MLGTGRQDLE QMLRQFESQY GDKVRGWVGF SVKTAHRITA GADILLMPSR 660 FEPCGLNQLY AMTYGTIPVV HAVGGLRDTV EPFDPFNESG LGWTFDSAEA SKLIHALGNC 720 LWTYREFKRS WEGLQRRGME QDLSWDHAAQ LYEEVLVAAK YQW* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK14099 | PRK14099 | 5.0e-86 | 272 | 760 | 513 | + glycogen synthase; Provisional | ||
COG0297 | GlgA | 2.0e-135 | 272 | 761 | 507 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
PRK00654 | glgA | 4.0e-174 | 272 | 756 | 499 | + glycogen synthase; Provisional | ||
TIGR02095 | glgA | 0 | 272 | 759 | 495 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 273 | 756 | 490 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF13168.1 | 0 | 1 | 763 | 1 | 751 | AF173900_1 granule bound starch synthase II precursor [Manihot esculenta] |
GenBank | ABV25894.1 | 0 | 1 | 763 | 1 | 751 | starch synthase isoform II [Manihot esculenta] |
RefSeq | XP_002278470.1 | 0 | 59 | 763 | 70 | 772 | PREDICTED: similar to starch synthase [Vitis vinifera] |
RefSeq | XP_002324061.1 | 0 | 1 | 763 | 1 | 742 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002531856.1 | 0 | 1 | 763 | 1 | 754 | starch synthase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vuf_A | 0 | 272 | 757 | 10 | 509 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 3vue_A | 0 | 272 | 757 | 10 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
PDB | 3d1j_A | 0 | 272 | 755 | 1 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3guh_A | 0 | 272 | 762 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4u_A | 0 | 272 | 762 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO777841 | 319 | 446 | 764 | 0 |
HO777841 | 404 | 61 | 453 | 0 |
HO781048 | 393 | 372 | 764 | 0 |
HO445868 | 438 | 327 | 764 | 0 |
HO781048 | 53 | 319 | 371 | 0.02 |
Sequence Alignments (This image is cropped. Click for full image.) |
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