| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10033018 |
| Family | PL1 |
| Protein Properties | Length: 501 Molecular Weight: 56003.3 Isoelectric Point: 7.7854 |
| Chromosome | Chromosome/Scaffold: 51 Start: 1337989 End: 1340755 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 219 | 418 | 0 |
| WIIFARDMNIKLNKELIMTSNKTIDGRGANVHIAFGAGITIQFVCNVIIHGIHIHHIVATSGGLIRDSVDHYGHRTQSDGDGISIFGSSNVWIDHVSMSR CTDGLIDAIQGSTAITISNSHFTHHNDAILLGASDSFSGDQFMQITVAYNHFGQGLVQRMPRCRWGFFHVVNNDYTHWRLYAIGGSKHPTIISQGNQFIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 501 Download |
| MTRVFMLILF ISLATAIQCL GQGGVADLDE VWQKRAEEAK KNAMKAYVPN PLEIDLEEAV 60 ASQSTQIGCP PPAELAPGLS STSMTVEAQD DHTDGETENN SEEYNNTTEH LVVPEEENDD 120 GDEVFNSNVN STRRGLKQGK TKYKGPCQKT NPIDKCWRCR KNWSKQRRRL AKCALGFGRR 180 TRGGVEGRIY VVTDNSDDDV LEPKPGTLRY AVIQREPLWI IFARDMNIKL NKELIMTSNK 240 TIDGRGANVH IAFGAGITIQ FVCNVIIHGI HIHHIVATSG GLIRDSVDHY GHRTQSDGDG 300 ISIFGSSNVW IDHVSMSRCT DGLIDAIQGS TAITISNSHF THHNDAILLG ASDSFSGDQF 360 MQITVAYNHF GQGLVQRMPR CRWGFFHVVN NDYTHWRLYA IGGSKHPTII SQGNQFIAPH 420 EKELKQITKR DYAGEDEWRT WIWKSEKDHF LNGAYFIESG ETSLRPNPAK KFMITPKPGV 480 FATKMTRFAG ALHCKPRKKC * |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| pfam04431 | Pec_lyase_N | 4.0e-8 | 24 | 54 | 31 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. |
| COG3866 | PelB | 5.0e-23 | 238 | 491 | 275 | + Pectate lyase [Carbohydrate transport and metabolism] |
| pfam00544 | Pec_lyase_C | 2.0e-53 | 233 | 416 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
| smart00656 | Amb_all | 7.0e-65 | 225 | 419 | 206 | + Amb_all domain. |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK28696.1 | 0 | 1 | 500 | 3 | 472 | unknown [Arabidopsis thaliana] |
| RefSeq | NP_186776.1 | 0 | 3 | 500 | 5 | 475 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_197015.4 | 0 | 1 | 500 | 3 | 472 | lyase/ pectate lyase [Arabidopsis thaliana] |
| RefSeq | XP_002306040.1 | 0 | 6 | 500 | 7 | 432 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002323835.1 | 0 | 28 | 500 | 28 | 452 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 151 | 492 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 151 | 492 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 1e-16 | 232 | 407 | 62 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.000000000000002 | 223 | 416 | 114 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pcl_A | 0.000000000000003 | 229 | 490 | 71 | 351 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
