| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10033784 |
| Family | GH10 |
| Protein Properties | Length: 860 Molecular Weight: 97273.5 Isoelectric Point: 6.2626 |
| Chromosome | Chromosome/Scaffold: 222 Start: 198890 End: 223074 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH10 | 507 | 766 | 0 |
| TSFPFGCGMNAYILNCSSYQQWFASRFKYTTFTNAMKWYSTEVVQGQENYTTPDAMLQFCKQNGISIRGHNIFWDNPKEQPEWVMNLTGTQLREAAEERI ESVVSRYKGELIAWDVVNENLHFSFFEDRLGKDASAHFFREAHLIDPDVRLFMNEYNTVENNRDTTAHPVNYLKRFEEIRAYPGNARIRAGIGLQTSSFG YGKPDLAHMRSALDVYSSMGLPLWLTEVSVHRGPNQGEYLEQILREGYCHPAVEGIIMFA | |||
| Full Sequence |
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| Protein Sequence Length: 860 Download |
| MEAFSFTKTF TSLPIHNPIH SSSSSRLTEF RFRRQPISHL NPIHGRRRRN NSSRSKLFAS 60 VSDQISGPPP LEIAVNDDDD DKPEEEVEEE EKFDWFAHWY PVMPVCDLDK RIPHAKTVMG 120 IDLVAWWDRN EGAWKVFDDM CPHRLAPLSE GRIDQWGRLQ CVYHGWCFDG SGACKLIPQA 180 PLDGPPIHTS KRACVASYPS TVQNGILWVW PNSDPKYSDI LSVQKPPYIS ELDDPSFTKP 240 MANRDFPFGY EILTENLIDP SHVPYAHFKL LPNPTPKEKR VDREGGTPVE MKLETFDMNG 300 FHTARFGGES KFIAPCVYYS SVSVTALREL SKKEGDSSSS AVPKVKCLAA PGKPLYDGGI 360 MDNTTHLVAN RTWKVYLDKR NLYVFSAWLQ INKESGIVVD AVFRRSTGEV LNVGRFIARE 420 GCWSMLKGGF SPNFSGYVEI LFQSEEDPTA EIRAESISLQ PFTIQQWRSH QDQSIEKIRK 480 SKVRFRIADP NGNPLPNAAI TLNQITTSFP FGCGMNAYIL NCSSYQQWFA SRFKYTTFTN 540 AMKWYSTEVV QGQENYTTPD AMLQFCKQNG ISIRGHNIFW DNPKEQPEWV MNLTGTQLRE 600 AAEERIESVV SRYKGELIAW DVVNENLHFS FFEDRLGKDA SAHFFREAHL IDPDVRLFMN 660 EYNTVENNRD TTAHPVNYLK RFEEIRAYPG NARIRAGIGL QTSSFGYGKP DLAHMRSALD 720 VYSSMGLPLW LTEVSVHRGP NQGEYLEQIL REGYCHPAVE GIIMFAGPES AGFKELTLAD 780 KDFRNTAAGD VVDKLLNEWK SDGDVAYAAD GEGFVQGSLF YGDYEISIRN PETNSVTSLT 840 YKHSKAAHGD SAVNLHVHA* 900 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG4638 | HcaE | 1.0e-36 | 95 | 271 | 183 | + Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only] | ||
| pfam00331 | Glyco_hydro_10 | 3.0e-51 | 509 | 762 | 271 | + Glycosyl hydrolase family 10. | ||
| PLN02518 | PLN02518 | 3.0e-60 | 95 | 324 | 236 | + pheophorbide a oxygenase | ||
| cd03480 | Rieske_RO_Alpha_PaO | 1.0e-71 | 95 | 217 | 123 | + Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The Arabidopsis-accelerated cell death gene ACD1 is involved in oxygenation of PaO. | ||
| smart00633 | Glyco_10 | 9.0e-72 | 542 | 792 | 273 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016491 | oxidoreductase activity |
| GO:0051537 | 2 iron, 2 sulfur cluster binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002313181.1 | 0 | 346 | 859 | 33 | 575 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002313182.1 | 0 | 363 | 847 | 55 | 535 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002313183.1 | 0 | 374 | 857 | 28 | 506 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002532419.1 | 0 | 347 | 858 | 8 | 549 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
| RefSeq | XP_002532422.1 | 0 | 346 | 857 | 22 | 562 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1e0v_A | 8e-25 | 511 | 740 | 16 | 243 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| PDB | 1v0n_A | 8e-25 | 511 | 740 | 16 | 243 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| PDB | 1v0m_A | 8e-25 | 511 | 740 | 16 | 243 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| PDB | 1v0l_A | 8e-25 | 511 | 740 | 16 | 243 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| PDB | 1v0k_A | 8e-25 | 511 | 740 | 16 | 243 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| JG091004 | 217 | 644 | 860 | 0 |
| JG250081 | 216 | 645 | 860 | 0 |
| JG095053 | 216 | 645 | 860 | 0 |
| JG098100 | 217 | 644 | 860 | 0 |
| JG094690 | 215 | 646 | 860 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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