| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10033786 |
| Family | CBM22 |
| Protein Properties | Length: 577 Molecular Weight: 64503.2 Isoelectric Point: 6.8614 |
| Chromosome | Chromosome/Scaffold: 222 Start: 230513 End: 233531 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 35 | 153 | 1.2e-21 |
| IIVNPDVNNGMTGWTTFGNPTLENRTAASNINTFVVAHTRSAPFDSVSQTVYLHSHLLYTFSAWVQVNQGNVHVTATFKTSDGSFLRAGGAVAESGCWSM LKGGLTVNTSGQADLYFHT | |||
| GH10 | 213 | 477 | 0 |
| KSSRFQLGCAMNKNILTNQAYQKWFTSRRFGVTTFEDEMKWYSTEYTRGHEDYSAADSMLRFSKMHNIAVRGHNVLWDDPHYQPGWLTSLSGPDFAAAVN RRINSVVSRYKGQLISWDVVNEDVHFSFFESKLGAQASGNAYRMAHRLDPNTPLFINDFNTIEESRDGVSVPGKYLQKLREVSRFSDNVRIKFGIGLEAH FGGTPNIPYMRSSIDTLAAAGIPIWLTEVDVKSSPDQAGYLEQVLREGHGHPKVDGMVLWAAWKP | |||
| Full Sequence |
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| Protein Sequence Length: 577 Download |
| MQIYQFPSVR GLPYDYTASI KCLEVPHKAQ YKGGIIVNPD VNNGMTGWTT FGNPTLENRT 60 AASNINTFVV AHTRSAPFDS VSQTVYLHSH LLYTFSAWVQ VNQGNVHVTA TFKTSDGSFL 120 RAGGAVAESG CWSMLKGGLT VNTSGQADLY FHTHNSTADI WIDSISLQPF TQEEWTSHHH 180 QTIQQIRKRK VRIQAVNRQG TPLRNAKVSI NRKSSRFQLG CAMNKNILTN QAYQKWFTSR 240 RFGVTTFEDE MKWYSTEYTR GHEDYSAADS MLRFSKMHNI AVRGHNVLWD DPHYQPGWLT 300 SLSGPDFAAA VNRRINSVVS RYKGQLISWD VVNEDVHFSF FESKLGAQAS GNAYRMAHRL 360 DPNTPLFIND FNTIEESRDG VSVPGKYLQK LREVSRFSDN VRIKFGIGLE AHFGGTPNIP 420 YMRSSIDTLA AAGIPIWLTE VDVKSSPDQA GYLEQVLREG HGHPKVDGMV LWAAWKPQGC 480 YRMCLTDNEF RNLPTGDVVD KLLGEWGGYG YLGETDEDGY LETSLFRGEY EVAISHPDLF 540 GNSTTTMAKK LSVASTPVDD DDDDATGNPL ILQVMA* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 0.0001 | 33 | 153 | 129 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 2.0e-36 | 240 | 443 | 217 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 2.0e-50 | 214 | 472 | 279 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 3.0e-75 | 251 | 499 | 274 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAN10199.1 | 0 | 6 | 574 | 22 | 584 | endoxylanase [Carica papaya] |
| RefSeq | NP_195110.3 | 0 | 10 | 537 | 21 | 546 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| RefSeq | NP_195112.2 | 0 | 12 | 552 | 23 | 559 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| RefSeq | XP_002313180.1 | 0 | 20 | 546 | 1 | 522 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002532418.1 | 0 | 8 | 575 | 17 | 567 | Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 5e-28 | 219 | 499 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0n_A | 8e-26 | 213 | 472 | 11 | 266 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0m_A | 8e-26 | 213 | 472 | 11 | 266 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0l_A | 8e-26 | 213 | 472 | 11 | 266 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0k_A | 8e-26 | 213 | 472 | 11 | 266 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EX266128 | 271 | 232 | 501 | 0 |
| AM722845 | 268 | 183 | 450 | 0 |
| GE471597 | 299 | 151 | 449 | 0 |
| FL914612 | 264 | 175 | 437 | 0 |
| GR186303 | 242 | 260 | 501 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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