| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10034490 |
| Family | GH10 |
| Protein Properties | Length: 525 Molecular Weight: 59066.7 Isoelectric Point: 6.7887 |
| Chromosome | Chromosome/Scaffold: 310 Start: 1541988 End: 1544710 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH10 | 215 | 410 | 0 |
| LSKDFPFGSAISKTILGNQAYQKWYLERFNAAVFENELKWYATEPKQGQLNYTIPDKMMEFVRSNGLLTRGHNIFWEDPKYTPEWVKQLAGEQLHAAVES RIRSLMNKYREEFVNWDVSNEMLHFNFYEEKLGRDATLHFFKTAHESDPLATLFMNDYNVVESCTDLNSTVDNYISRLKELQQGGATMDGIGLEFR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 525 Download |
| MGFCTIIQLT LSASARRTQP PPPQPLYGGG ILRHRRPVQW KDNEDSSPAF ILSNLTQGSF 60 YSFSVWVKVK AGKPTTVTAR LKTDNTTYGC IGSVLAKNNC WSFLKGGFVL EEEPSASTIL 120 YLQVITKLDS ARVLKLVSSS TDQFSNACQH MLQSPSQKRL AVSITSGSLQ PFTSEEWTAN 180 QQNIIDTQRK RAVTVHVSDS TGNRLKGASI KVEQLSKDFP FGSAISKTIL GNQAYQKWYL 240 ERFNAAVFEN ELKWYATEPK QGQLNYTIPD KMMEFVRSNG LLTRGHNIFW EDPKYTPEWV 300 KQLAGEQLHA AVESRIRSLM NKYREEFVNW DVSNEMLHFN FYEEKLGRDA TLHFFKTAHE 360 SDPLATLFMN DYNVVESCTD LNSTVDNYIS RLKELQQGGA TMDGIGLEFR LLEARYLERV 420 LREGFSHPAV DGIMLWTALD TKGCYEMCLT DNDIKNLPAG DTVDKLLKEW STGEVNGSSD 480 EQGSYSFYGY LGEYSVKVEY GGRVVNSTLA LSKGDETKQL SIRV* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3693 | XynA | 5.0e-29 | 217 | 408 | 203 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 7.0e-42 | 213 | 407 | 204 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 2.0e-54 | 252 | 463 | 269 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF94920.1 | 0 | 17 | 524 | 48 | 563 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
| EMBL | CBI37893.1 | 0 | 25 | 524 | 119 | 625 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_195577.2 | 0 | 24 | 524 | 48 | 562 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| RefSeq | XP_002277675.1 | 0 | 25 | 524 | 43 | 549 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002534153.1 | 0 | 64 | 524 | 8 | 473 | Endo-1,4-beta-xylanase A precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1v6y_A | 1e-24 | 221 | 412 | 16 | 209 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
| PDB | 2g4f_B | 1e-24 | 221 | 444 | 16 | 242 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
| PDB | 2g4f_A | 1e-24 | 221 | 444 | 16 | 242 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
| PDB | 2g3j_A | 1e-24 | 221 | 444 | 16 | 242 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
| PDB | 2g3i_A | 1e-24 | 221 | 444 | 16 | 242 | A Chain A, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FL929887 | 250 | 160 | 408 | 0 |
| GR953916 | 292 | 195 | 450 | 0 |
| ES803339 | 203 | 206 | 408 | 0 |
| EL361489 | 267 | 257 | 486 | 0 |
| DR965570 | 302 | 94 | 395 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
