y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10035620 |
Family | GH19 |
Protein Properties | Length: 390 Molecular Weight: 43387 Isoelectric Point: 8.863 |
Chromosome | Chromosome/Scaffold: 464 Start: 632398 End: 635324 |
Description | Chitinase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH19 | 29 | 206 | 0 |
QVANIVTPAFFNGIRNRGGNNCAGKSFYTREAFIQAARSYPSFGNRGSDAGSKREIAAFFAHVTHETGSMCYIEEINKAEYCDRSQYPCAQGKRYYGRGP LQLTWNYNYAEAGKANGFDGVANPDIVARDPVLAWRTALWFWMTNVRAVLPQGFGATIRKINGMECNGGNTPAVNARA | |||
GH19 | 203 | 389 | 0 |
NARAGPGCKGKQFYKRRDFLKAAKSYPRFGNFPSDHKESRREVAAFFAHVTHETGQLCYVEETERGKYCDSSAVEYPCVPGKQYYGRGPLQLPWNYNYGA CGKANGFDSLRNPEIVATDPVLTWKTVLWFWTTSVRPTERKGSGETIHRVNGLECHGGNTDEVDDRVRYYIEFCKQLDVTPGQHIRC |
Full Sequence |
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Protein Sequence Length: 390 Download |
MAKFLQLLIA AIATLVASLA ITTTVVEAQV ANIVTPAFFN GIRNRGGNNC AGKSFYTREA 60 FIQAARSYPS FGNRGSDAGS KREIAAFFAH VTHETGSMCY IEEINKAEYC DRSQYPCAQG 120 KRYYGRGPLQ LTWNYNYAEA GKANGFDGVA NPDIVARDPV LAWRTALWFW MTNVRAVLPQ 180 GFGATIRKIN GMECNGGNTP AVNARAGPGC KGKQFYKRRD FLKAAKSYPR FGNFPSDHKE 240 SRREVAAFFA HVTHETGQLC YVEETERGKY CDSSAVEYPC VPGKQYYGRG PLQLPWNYNY 300 GACGKANGFD SLRNPEIVAT DPVLTWKTVL WFWTTSVRPT ERKGSGETIH RVNGLECHGG 360 NTDEVDDRVR YYIEFCKQLD VTPGQHIRC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd00442 | lysozyme_like | 5.0e-9 | 109 | 175 | 67 | + lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides. | ||
pfam00182 | Glyco_hydro_19 | 2.0e-62 | 205 | 389 | 221 | + Chitinase class I. | ||
pfam00182 | Glyco_hydro_19 | 3.0e-70 | 53 | 218 | 203 | + Chitinase class I. | ||
cd00325 | chitinase_glyco_hydro_19 | 7.0e-73 | 205 | 389 | 219 | + Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the procaryotic/eucaryotic divergence. | ||
cd00325 | chitinase_glyco_hydro_19 | 1.0e-79 | 53 | 218 | 202 | + Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the procaryotic/eucaryotic divergence. |
Gene Ontology | |
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GO Term | Description |
GO:0004568 | chitinase activity |
GO:0006032 | chitin catabolic process |
GO:0016998 | cell wall macromolecule catabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95688.1 | 0 | 22 | 205 | 66 | 253 | unknown [Populus trichocarpa] |
GenBank | ABK95688.1 | 0 | 199 | 389 | 79 | 274 | unknown [Populus trichocarpa] |
GenBank | ACZ52964.1 | 0 | 12 | 207 | 10 | 208 | chitinase [Dimocarpus longan] |
RefSeq | XP_002275534.1 | 0 | 30 | 207 | 68 | 250 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002275534.1 | 0 | 205 | 389 | 83 | 269 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3hbh_A | 0 | 29 | 205 | 1 | 183 | A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module (Bjchi3) |
PDB | 3hbh_A | 0 | 206 | 389 | 18 | 204 | A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module (Bjchi3) |
PDB | 3hbe_X | 0 | 29 | 205 | 1 | 183 | A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module (Bjchi3) |
PDB | 3hbe_X | 0 | 206 | 389 | 18 | 204 | A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module (Bjchi3) |
PDB | 3hbd_A | 0 | 29 | 205 | 1 | 183 | A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a |