Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10036035 |
Family | GH28 |
Protein Properties | Length: 356 Molecular Weight: 37049 Isoelectric Point: 7.5821 |
Chromosome | Chromosome/Scaffold: 76 Start: 825558 End: 827777 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 22 | 342 | 0 |
AATCSSTAQNPTMGIPGKTFLLSPLTFNGPCKSPTIHVQFFGKIVAPKRGNWKGDASKWLTFSGVNGLILDGNGQFDGQGSDWWLACPKALTFNGCNNLQ VKGLKHINSGLNHISIASCNNAVLSNLHISAPATSPNTDGIDIARSTFVTVLNTNIATGDDCIAINTESSSINITGVSCGPGHGISVGSLGVGGGLARVE GVHVKNCTFIGTDNGARIKTWENGGGYAKNITFEDIILVGARNPIIIDQFYCPNCGDVLKAVDITGITYKGFRGTSTVANVINLLCSASKGCTHLLLQDI NIATTTPSFKPFANCSNAHGK |
Full Sequence |
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Protein Sequence Length: 356 Download |
MDFGATGTGT TDDSMAFSKA WAATCSSTAQ NPTMGIPGKT FLLSPLTFNG PCKSPTIHVQ 60 FFGKIVAPKR GNWKGDASKW LTFSGVNGLI LDGNGQFDGQ GSDWWLACPK ALTFNGCNNL 120 QVKGLKHINS GLNHISIASC NNAVLSNLHI SAPATSPNTD GIDIARSTFV TVLNTNIATG 180 DDCIAINTES SSINITGVSC GPGHGISVGS LGVGGGLARV EGVHVKNCTF IGTDNGARIK 240 TWENGGGYAK NITFEDIILV GARNPIIIDQ FYCPNCGDVL KAVDITGITY KGFRGTSTVA 300 NVINLLCSAS KGCTHLLLQD INIATTTPSF KPFANCSNAH GKSFDVSPPI DCLLP* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 3.0e-74 | 3 | 349 | 365 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 3.0e-77 | 25 | 340 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-77 | 2 | 353 | 370 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 3.0e-96 | 1 | 353 | 359 | + polygalacturonase | ||
PLN03003 | PLN03003 | 1.0e-97 | 3 | 353 | 363 | + Probable polygalacturonase At3g15720 |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI36306.1 | 0 | 1 | 354 | 127 | 494 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266543.1 | 0 | 1 | 353 | 23 | 374 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002266797.1 | 0 | 1 | 354 | 21 | 373 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002515526.1 | 0 | 1 | 353 | 31 | 392 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ib4_B | 7e-22 | 58 | 324 | 48 | 322 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1ib4_A | 7e-22 | 58 | 324 | 48 | 322 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1ia5_A | 7e-22 | 58 | 324 | 48 | 322 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 2iq7_G | 2e-19 | 23 | 338 | 16 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-19 | 23 | 338 | 16 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CV536748 | 256 | 63 | 307 | 0 |
CX192293 | 238 | 38 | 272 | 0 |
EY474520 | 245 | 109 | 353 | 0 |
CV538127 | 233 | 25 | 245 | 0 |
CJ666707 | 264 | 38 | 290 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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