Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10036084 |
Family | GH28 |
Protein Properties | Length: 451 Molecular Weight: 49067.1 Isoelectric Point: 8.1526 |
Chromosome | Chromosome/Scaffold: 76 Start: 1135615 End: 1138011 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 82 | 413 | 0 |
ACSLPKRSRIVLPIGTYLVHPVVLSGPCKSKITFSIAGTIVAPQDPQAWRGLNHRRWLYFAKVNHLRFEGGTINGMGQQWWANSCKTHKKNVSCVPFLLQ ALTFHRCKDLKVGNLRVVDSQQMHIAFTNCVRVSVTQLEVLAPAFSPNTDGVHISSSSGVHVMNSVIKTGDDCISIVGNSSRINVKNVVCGPGHGISIGS LGKSNSTDFVESVSVDGAFLSNTQNGLRIKTWQGGSGKASDISFQNVHMENVSNPIIIDQFYCDSKFPCANQTMAVKVEDVSFKHIKGTSATPEAIRFSC SDYSSCEGLYLQDVQLLLSSEGGVTESFCWEA |
Full Sequence |
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Protein Sequence Length: 451 Download |
MKSSQLCCCC WKTPAVILLL SIVLGIVCAE GFESGLELPQ SGSASAIRRF RSKRVIYIHD 60 FGASGDGVQN DTQALEDAWE IACSLPKRSR IVLPIGTYLV HPVVLSGPCK SKITFSIAGT 120 IVAPQDPQAW RGLNHRRWLY FAKVNHLRFE GGTINGMGQQ WWANSCKTHK KNVSCVPFLL 180 QALTFHRCKD LKVGNLRVVD SQQMHIAFTN CVRVSVTQLE VLAPAFSPNT DGVHISSSSG 240 VHVMNSVIKT GDDCISIVGN SSRINVKNVV CGPGHGISIG SLGKSNSTDF VESVSVDGAF 300 LSNTQNGLRI KTWQGGSGKA SDISFQNVHM ENVSNPIIID QFYCDSKFPC ANQTMAVKVE 360 DVSFKHIKGT SATPEAIRFS CSDYSSCEGL YLQDVQLLLS SEGGVTESFC WEAYGTSGGS 420 VFPPPCFTSD EQFIKQNIPH QKISLFNLRR * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 8.0e-87 | 41 | 426 | 395 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 7.0e-90 | 55 | 427 | 374 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 9.0e-96 | 83 | 410 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 3.0e-110 | 50 | 423 | 379 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 0 | 29 | 446 | 422 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD28401.1 | 0 | 29 | 438 | 32 | 440 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ABM67700.1 | 0 | 5 | 439 | 3 | 437 | polygalacturonase [Citrus sinensis] |
RefSeq | NP_565232.1 | 0 | 29 | 438 | 28 | 435 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002299601.1 | 0 | 10 | 446 | 9 | 447 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517603.1 | 0 | 22 | 446 | 1 | 424 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 8e-21 | 152 | 343 | 117 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 6e-18 | 83 | 385 | 45 | 338 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 6e-18 | 83 | 385 | 45 | 338 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1nhc_F | 6e-18 | 150 | 385 | 76 | 312 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 6e-18 | 150 | 385 | 76 | 312 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |