Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10036721 |
Family | PL1 |
Protein Properties | Length: 439 Molecular Weight: 48992.8 Isoelectric Point: 8.5936 |
Chromosome | Chromosome/Scaffold: 31 Start: 247881 End: 249409 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 157 | 356 | 0 |
WIIFGRSMVIKLCQELMVTCDKTIDARGANVHITKGAGITLQYVQNVIIHGLHIHDIVPGSGGLIRDSVDHYGFRSRSDGDGISLYGASNIWIDHVSMSN CGDGVIDAIMGTTGVTISNSHFTHHNEVLLFGASASHSNDTIMQITIAFTHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSNKPTIISQGNRFIA |
Full Sequence |
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Protein Sequence Length: 439 Download |
MDSLCIRLSL VVLVVVSTLV YDVGAHIADF DEYWQQRAEE ARRAALQTYH PEPYNVTEHF 60 NAMVHMDLFG SNTTRRSMKK NWGPCMATNP IDRCWRCDPN WAKNRQKLAD CVQGFGYKTR 120 GGKGGPIYVV TDGSDDDMVN PKPGTLRHAV IQKGPLWIIF GRSMVIKLCQ ELMVTCDKTI 180 DARGANVHIT KGAGITLQYV QNVIIHGLHI HDIVPGSGGL IRDSVDHYGF RSRSDGDGIS 240 LYGASNIWID HVSMSNCGDG VIDAIMGTTG VTISNSHFTH HNEVLLFGAS ASHSNDTIMQ 300 ITIAFTHFGR GLVQRMPRCR WGFFHVVNND YTHWLMYAIG GSNKPTIISQ GNRFIAPENH 360 HAKQVTKREY ASEGDWKSWD WVTEGDLLMN GAYFIPSGNP RVASKYSNRQ LIKQKPGTFV 420 TRMVRYAGTL ECRVGKPC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 4.0e-14 | 26 | 78 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 6.0e-25 | 171 | 354 | 196 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 8.0e-61 | 170 | 354 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-70 | 164 | 357 | 205 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 19 | 438 | 20 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 19 | 438 | 49 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270089.1 | 0 | 23 | 438 | 24 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 12 | 438 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 8 | 438 | 9 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 89 | 430 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 89 | 430 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-18 | 109 | 345 | 15 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 0.0000000000004 | 144 | 411 | 42 | 338 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1vbl_A | 0.00000000002 | 172 | 354 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |