Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10037456 |
Family | CE8 |
Protein Properties | Length: 350 Molecular Weight: 38307.4 Isoelectric Point: 9.182 |
Chromosome | Chromosome/Scaffold: 196 Start: 72066 End: 74138 |
Description | pectin methylesterase 1 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 41 | 334 | 0 |
NVTVAKDGTGNFTTIREAVPGIPKKSQWRYVIYIKEGVYKENVILEKQLWNVVVYGDGKDKTVISGSLNFIDGTPTFSTPTFAAVGKGFMARDIKFINTA GPSKHQAVAFRSGADMSVYYKCAFDAYQDTLYPHSNRQFYKDCDITGTIDFIFGNAAVVFQGCNIMPRQPLPNQFNTITAQGKKDPNQNTGISIQKCSFF PLEKNLTARTYLGRPWKDFSTTVIMQSSIDGFVSPLGWLSWVSGVDPPNTIFYAEYQNTGPGSGVAGRVKWAGYRPGLTSDDAAKFTVESFLHG |
Full Sequence |
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Protein Sequence Length: 350 Download |
MTTTAEDSTS DLKLGFPRWL SSGDRRLLQA IGRGGGAMMP NVTVAKDGTG NFTTIREAVP 60 GIPKKSQWRY VIYIKEGVYK ENVILEKQLW NVVVYGDGKD KTVISGSLNF IDGTPTFSTP 120 TFAAVGKGFM ARDIKFINTA GPSKHQAVAF RSGADMSVYY KCAFDAYQDT LYPHSNRQFY 180 KDCDITGTID FIFGNAAVVF QGCNIMPRQP LPNQFNTITA QGKKDPNQNT GISIQKCSFF 240 PLEKNLTART YLGRPWKDFS TTVIMQSSID GFVSPLGWLS WVSGVDPPNT IFYAEYQNTG 300 PGSGVAGRVK WAGYRPGLTS DDAAKFTVES FLHGSTWLPA TSVAFDSTL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02201 | PLN02201 | 2.0e-141 | 7 | 349 | 347 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02301 | PLN02301 | 6.0e-146 | 6 | 349 | 349 | + pectinesterase/pectinesterase inhibitor | ||
PLN02468 | PLN02468 | 1.0e-167 | 17 | 349 | 333 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02314 | PLN02314 | 0 | 11 | 349 | 339 | + pectinesterase | ||
pfam01095 | Pectinesterase | 0 | 41 | 335 | 299 | + Pectinesterase. |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI35795.1 | 0 | 16 | 349 | 343 | 670 | unnamed protein product [Vitis vinifera] |
EMBL | CBI35795.1 | 0 | 96 | 341 | 4 | 252 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002265217.1 | 0 | 16 | 349 | 251 | 578 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002304256.1 | 0 | 16 | 349 | 261 | 588 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002532945.1 | 0 | 15 | 349 | 260 | 589 | Pectinesterase-3 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 40 | 345 | 7 | 315 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 38 | 345 | 1 | 311 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 1e-17 | 37 | 339 | 1 | 339 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 1e-17 | 37 | 339 | 1 | 339 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 2e-17 | 37 | 339 | 1 | 339 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO922369 | 265 | 81 | 345 | 0 |
DT755207 | 277 | 74 | 350 | 0 |
EL470553 | 277 | 23 | 299 | 0 |
BM406452 | 267 | 64 | 330 | 0 |
JG071094 | 197 | 154 | 350 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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