Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10037834 |
Family | GH28 |
Protein Properties | Length: 482 Molecular Weight: 51793.2 Isoelectric Point: 4.5745 |
Chromosome | Chromosome/Scaffold: 196 Start: 1886132 End: 1889640 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 113 | 436 | 0 |
ACGVESATVLAPSGFSFMITSTIFNGPCKPGLVLKIDGCLMPPDGPDSWPDGDSKQQWLVFYRLNDMTLTGEGTIEGNGDKWWDLPCKPHRGTDGTASSD GCESPTLIRFFMSSNLVVSGIRIQNSPMFHMKFDGCDGVLIEKIQISSPKLSPNTDGIHIGNTNNVGIYNSMISNGDDCVSIGTGTSNIDIEGLTCGPSH GISIGSLGVHNSKACVYNITARNLLIRESDNGVRIKTWQGGSGSVSGISFENIQMENVRNCINIDQYYCNSKSCENQTSAVYVNDISFRNIKGTYDVRTP PVHFACSDTVACTNITLSEVELLP |
Full Sequence |
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Protein Sequence Length: 482 Download |
MEIVIARRAL LLTVVLATMA LALHNSCIVV VQGRHTFHKA KKGKHIPPNS PVPSPEYSNP 60 PPPPASSLVP SDPYPNEPPG DSDDCIFDVR SYGAVGDGST DDTAAFRAAW KDACGVESAT 120 VLAPSGFSFM ITSTIFNGPC KPGLVLKIDG CLMPPDGPDS WPDGDSKQQW LVFYRLNDMT 180 LTGEGTIEGN GDKWWDLPCK PHRGTDGTAS SDGCESPTLI RFFMSSNLVV SGIRIQNSPM 240 FHMKFDGCDG VLIEKIQISS PKLSPNTDGI HIGNTNNVGI YNSMISNGDD CVSIGTGTSN 300 IDIEGLTCGP SHGISIGSLG VHNSKACVYN ITARNLLIRE SDNGVRIKTW QGGSGSVSGI 360 SFENIQMENV RNCINIDQYY CNSKSCENQT SAVYVNDISF RNIKGTYDVR TPPVHFACSD 420 TVACTNITLS EVELLPHEGE LLDDPFCWNA YGTQETVTIP PIECLNDGVP QNVEELSAYA 480 C* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 4.0e-76 | 87 | 465 | 387 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 1.0e-81 | 80 | 461 | 386 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 3.0e-85 | 119 | 434 | 317 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 9.0e-90 | 89 | 434 | 349 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-106 | 86 | 467 | 385 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK95305.1 | 0 | 8 | 481 | 2 | 475 | AF410319_1 At1g48100/F21D18_17 [Arabidopsis thaliana] |
RefSeq | NP_175244.1 | 0 | 8 | 481 | 2 | 475 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002263668.1 | 0 | 81 | 481 | 77 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312305.1 | 0 | 74 | 481 | 75 | 482 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519290.1 | 0 | 11 | 481 | 7 | 479 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rmg_A | 1e-23 | 88 | 453 | 22 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 2e-23 | 168 | 434 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-23 | 168 | 434 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-23 | 168 | 434 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-23 | 168 | 434 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |