y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10037945 |
Family | PL1 |
Protein Properties | Length: 786 Molecular Weight: 85831.5 Isoelectric Point: 6.2577 |
Chromosome | Chromosome/Scaffold: 475 Start: 497598 End: 502218 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 136 | 295 | 4.48416e-44 |
IQDAPLWIVFSGNMVIKLKHELIFNSYKTVDGRGANVHITGNGCLTLQYVNHIIIHNIRIYNCKPSGNTNVAASPTHVGYRGRSDGDGVSLFGAHNVWID HCTLSSCTDGLIDVIMGSTGITISNNYFSHHNEVMLMGHDDGYALDTGMQVTIAFNRFGE | |||
PL1 | 486 | 691 | 0 |
IQDAPLWIVFSGNMVIKLKHELIFNSYKTVDGRGANVHITGNGCLTLQYVNHIIIHNIRIYNCKPSGNTNVAASPTHVGYRGRSDGDGVSLFGAHNVWIV HCTLSSCTDGLIDVIMGSTGVTISNNYFSHHNEVMLMGHDDGYALDTGMQVTIAFNRFGEELVQRMPRCRRGYIHVVNNDFTYWKMYAIGGSANPTINSQ GNRYIA |
Full Sequence |
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Protein Sequence Length: 786 Download |
MAAAPIMLPI TVCILSLVSA AVAEAGTQFL NLTLPHQHPY PDDIAHDVLR QVNESLSRRL 60 LSSTQDKDLC RTGNPIDDCW RCDPNWTQNR QRLADCGIGF GRGALGGRGG QIYVVTDSSD 120 HDPANPTPGT LRYGVIQDAP LWIVFSGNMV IKLKHELIFN SYKTVDGRGA NVHITGNGCL 180 TLQYVNHIII HNIRIYNCKP SGNTNVAASP THVGYRGRSD GDGVSLFGAH NVWIDHCTLS 240 SCTDGLIDVI MGSTGITISN NYFSHHNEVM LMGHDDGYAL DTGMQVTIAF NRFGEELQDI 300 PSTLPFPPSP LATSIHFHST EKQAAAARRA LEIIEGSRKN NQTSPLSNIS MAAASIMLPI 360 TVCILFIFSA TVAEAETQFL NLTLPHQHPY PDDIAHDVLR QVNESLSRRL LSSTQDKDLC 420 RTGNPIDDCW RCDPNWSQNR QRLADCGIGF GRGALGGRGG QIYVVTDSSD HDPANPTPGT 480 LRYGVIQDAP LWIVFSGNMV IKLKHELIFN SYKTVDGRGA NVHITGNGCL TLQYVNHIII 540 HNIRIYNCKP SGNTNVAASP THVGYRGRSD GDGVSLFGAH NVWIVHCTLS SCTDGLIDVI 600 MGSTGVTISN NYFSHHNEVM LMGHDDGYAL DTGMQVTIAF NRFGEELVQR MPRCRRGYIH 660 VVNNDFTYWK MYAIGGSANP TINSQGNRYI APADPDAKEV TKRVDTEDNE WTDWNWRTDG 720 DIMVNGAFFV PSGAGGVSVQ YQKASSVDPK SAVLVDQLTL NAGVLGGPRS ELSEEGTNLR 780 CELED* 840 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-19 | 511 | 687 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 9.0e-33 | 154 | 293 | 162 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-40 | 148 | 294 | 158 | + Amb_all domain. | ||
pfam00544 | Pec_lyase_C | 1.0e-55 | 504 | 689 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-63 | 498 | 692 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002268818.1 | 0 | 380 | 771 | 26 | 418 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002316399.1 | 0 | 5 | 301 | 4 | 299 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002316399.1 | 0 | 351 | 769 | 1 | 415 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002534016.1 | 0 | 7 | 301 | 1 | 300 | Pectate lyase precursor, putative [Ricinus communis] |
RefSeq | XP_002534016.1 | 0 | 357 | 771 | 9 | 418 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 424 | 765 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_B | 0 | 74 | 294 | 2 | 223 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 424 | 765 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 74 | 294 | 2 | 223 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 0.00000000000003 | 443 | 691 | 2 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |