| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10037984 |
| Family | GH18 |
| Protein Properties | Length: 422 Molecular Weight: 45694.6 Isoelectric Point: 6.2184 |
| Chromosome | Chromosome/Scaffold: 475 Start: 699500 End: 703168 |
| Description | chitinase A |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH18 | 36 | 248 | 5.8e-25 |
| IAIYWGQHNGEGSLSETCGTGKYRYVIISFLCVFGNSQPYLLNLANHCDPHLDTCTSMSSHINDCQTKGIKVFLSLGGAAGSYYLTSDDDAKNLAHYLWH NYLGGHSDTRPFGSAVLDGIDLDIEGGTTQHWDTLARSLKSYQGVLLTAAPQCPYPDVYVGAAIATGLFDYLWVQFYNNAPCQYSSGNLVTSWHQWVSSA SATKIFLGLPAST | |||
| Full Sequence |
|---|
| Protein Sequence Length: 422 Download |
| MASSSTASIL VTLTTTSLVV ALLLLQQPQM ATAGSIAIYW GQHNGEGSLS ETCGTGKYRY 60 VIISFLCVFG NSQPYLLNLA NHCDPHLDTC TSMSSHINDC QTKGIKVFLS LGGAAGSYYL 120 TSDDDAKNLA HYLWHNYLGG HSDTRPFGSA VLDGIDLDIE GGTTQHWDTL ARSLKSYQGV 180 LLTAAPQCPY PDVYVGAAIA TGLFDYLWVQ FYNNAPCQYS SGNLVTSWHQ WVSSASATKI 240 FLGLPASTDA AGTGFIPASD LINDVLPKIK GSHKYGGVML WSKYYDHLSG FLKRHNENVT 300 LTAAPQCPFP DAWIGEALKT GLFDYVWIQF YNNPPCQYSS GGITNLEDTW KQWTSAIPAK 360 KIFLGLPAAP DAAGSGFVPA NDLESQILPV IKDSSKYGGV MLWSKYYDDQ TGYSKSIKNS 420 V* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00704 | Glyco_hydro_18 | 3.0e-6 | 291 | 411 | 143 | + Glycosyl hydrolases family 18. | ||
| COG3469 | COG3469 | 2.0e-13 | 85 | 286 | 246 | + Chitinase [Carbohydrate transport and metabolism] | ||
| pfam00704 | Glyco_hydro_18 | 4.0e-24 | 34 | 315 | 318 | + Glycosyl hydrolases family 18. | ||
| cd02877 | GH18_hevamine_XipI_class_III | 2.0e-55 | 282 | 419 | 147 | + This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin. | ||
| cd02877 | GH18_hevamine_XipI_class_III | 2.0e-120 | 34 | 286 | 268 | + This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF82271.1 | 0 | 1 | 299 | 1 | 298 | class III chitinase [Panax ginseng] |
| GenBank | ABF82271.1 | 0 | 261 | 421 | 139 | 298 | class III chitinase [Panax ginseng] |
| RefSeq | XP_002279147.1 | 0 | 33 | 295 | 25 | 297 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002279147.1 | 0 | 281 | 421 | 159 | 298 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002320164.1 | 0 | 15 | 299 | 9 | 300 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2hvm_A | 0 | 34 | 291 | 1 | 265 | A Chain A, The Structure Of Soybean Peroxidase |
| PDB | 2hvm_A | 0 | 261 | 421 | 114 | 273 | A Chain A, The Structure Of Soybean Peroxidase |
| PDB | 1llo_A | 0 | 34 | 291 | 1 | 265 | A Chain A, The Structure Of Soybean Peroxidase |
| PDB | 1llo_A | 0 | 261 | 421 | 114 | 273 | A Chain A, The Structure Of Soybean Peroxidase |
| PDB | 1hvq_A | 0 | 34 | 291 | 1 | 265 | A Chain A, Crystal Structures Of Hevamine, A Plant Defence Protein With Chitinase And Lysozyme Activity, And Its Complex With An Inhibitor |
