Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10038059 |
Family | GH28 |
Protein Properties | Length: 503 Molecular Weight: 54279.2 Isoelectric Point: 6.4967 |
Chromosome | Chromosome/Scaffold: 475 Start: 1092121 End: 1094158 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 129 | 469 | 0 |
AACQLGSSVIRVPKGLTFMIQSTIFTGPCQSGVIFQVDGTITPPDGPDSWPEKNSKKQWLVFYKVNEMSLVGGGGFNGRGQKWWDLPCKPHKVVINGTKP RGPCDSPIAIRFFMSSNLTVEGIRLKDSPQFNFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVGIYNSIVSNGDDCVSIGSGCYDVDIRNVTCGP SHGISIGSLGNHNSKACVSNITVRDSTIRASDNGVRIKTWQGGSGAVSGITFSNIHMDNVRNPIIIDQFYCLTKDCDNQTAAVHVSNVVYENIKGTYDTR SPPMHFGCSDSIPCTNLTISEVELLPAKGNVVSDAYCWNAY |
Full Sequence |
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Protein Sequence Length: 503 Download |
MELFPILLTI IIATTITSMT QARFHYHNHD HHHTKHNHPS QNGGLISYIS SPPTLPPDDL 60 ESPSPNSPQP FPPPRPKSAT LISPPTPAPA PAPANAYDDG QGVLDVRRFG AIGDGITDDT 120 IAFKMAWDAA CQLGSSVIRV PKGLTFMIQS TIFTGPCQSG VIFQVDGTIT PPDGPDSWPE 180 KNSKKQWLVF YKVNEMSLVG GGGFNGRGQK WWDLPCKPHK VVINGTKPRG PCDSPIAIRF 240 FMSSNLTVEG IRLKDSPQFN FRFDNCKNVH IESIHITAPA LSPNTDGIHI ENTNGVGIYN 300 SIVSNGDDCV SIGSGCYDVD IRNVTCGPSH GISIGSLGNH NSKACVSNIT VRDSTIRASD 360 NGVRIKTWQG GSGAVSGITF SNIHMDNVRN PIIIDQFYCL TKDCDNQTAA VHVSNVVYEN 420 IKGTYDTRSP PMHFGCSDSI PCTNLTISEV ELLPAKGNVV SDAYCWNAYG DLETLTIPPV 480 SCLMEGSPTR SILADHTADR CL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 4.0e-81 | 105 | 479 | 382 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 6.0e-85 | 104 | 483 | 387 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 5.0e-91 | 131 | 452 | 324 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-101 | 104 | 468 | 369 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-119 | 103 | 479 | 380 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37004.1 | 0 | 103 | 501 | 88 | 484 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002272733.1 | 0 | 103 | 501 | 69 | 456 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002302793.1 | 0 | 99 | 488 | 64 | 446 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002320271.1 | 0 | 102 | 501 | 41 | 438 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515219.1 | 0 | 50 | 501 | 67 | 537 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 6e-24 | 136 | 456 | 24 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 6e-24 | 136 | 456 | 24 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 6e-24 | 136 | 456 | 24 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 6e-24 | 136 | 456 | 24 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 6e-24 | 136 | 456 | 24 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |