y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10038157 |
Family | PL1 |
Protein Properties | Length: 448 Molecular Weight: 49499.8 Isoelectric Point: 7.6018 |
Chromosome | Chromosome/Scaffold: 28 Start: 72944 End: 76371 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 161 | 366 | 0 |
IQDRPLWIVFKRDMVITLRQELIMNSFKTIDGRGANVHIANGGCITIQFVTNIIIHGLNIHDCKPTGNAMVRSSPGHYGWRTMADGDGVSIFDSSHIWVD HNSLSNCADGLIDAIMGSTAITISNNFFTHHNEVILLGHSDSYVRDKQMQVTIAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQ GNRYLA |
Full Sequence |
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Protein Sequence Length: 448 Download |
MADSSRWIPV AALVGLLMLV AAAATADDLN SRKEKSLELM VQRWEEKNSS VPSNRMEEGE 60 MVNEHAVDNP EEIAEMVNES IMNSTARRKL GFFSCSTGNP IDDCWRCDPH WQTHRKRLAD 120 CAIGFGRNAI GGRDGRYYVV TDPRDDDAVN PRPGTLRHAV IQDRPLWIVF KRDMVITLRQ 180 ELIMNSFKTI DGRGANVHIA NGGCITIQFV TNIIIHGLNI HDCKPTGNAM VRSSPGHYGW 240 RTMADGDGVS IFDSSHIWVD HNSLSNCADG LIDAIMGSTA ITISNNFFTH HNEVILLGHS 300 DSYVRDKQMQ VTIAYNHFGE GLVQRMPRCR HGYFHVVNND YTHWEMYAIG GSANPTINSQ 360 GNRYLAPNNP FAKEVTKRVE TNNGVWKSWN WRSEGDLLLN GAYFKPSGAG AGASYARASS 420 LGAKPSSLVG MITSTSGALV CRRGRSC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 8.0e-26 | 186 | 362 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-71 | 180 | 364 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-79 | 173 | 368 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAF43573.1 | 0 | 19 | 447 | 1 | 425 | pectate lyase [Prunus persica] |
EMBL | CAN75298.1 | 0 | 1 | 447 | 1 | 445 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002265100.1 | 0 | 26 | 447 | 24 | 445 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002297822.1 | 0 | 1 | 447 | 1 | 450 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002521130.1 | 0 | 4 | 447 | 6 | 441 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 99 | 408 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 99 | 408 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 0.000000000000003 | 168 | 366 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000002 | 179 | 364 | 125 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.0000000000005 | 179 | 368 | 73 | 280 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |