Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10038446 |
Family | AA7 |
Protein Properties | Length: 530 Molecular Weight: 58658.9 Isoelectric Point: 7.1889 |
Chromosome | Chromosome/Scaffold: 28 Start: 1358884 End: 1361339 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 73 | 525 | 0 |
NSTSKPLLIMTPSEVGEIQAALHCSRANGLDLRQRSGGHDYEAISYVSTGKKPYIVVDLFNLNSVQIDVKSETAWVESGAQLGELYYAIAKQTSNLAFPA GICPTVGVGGHFGGGGFGTLVRKYGLAADNVIDANLIDARGRVMNRKEMGEEVFWAIRGGSAGSFGIVVSWKVKLVRVPEKLTFFSVSKTLEQGANGLIH KWQKFGHDAPEDLFVRILILNSVNGNGNKTVEARFQSLFLGTIDKLIPLVNQTFPELGLRAENCTEMTWGESTLEFAGFKSGSVIEALLDKTQMFKAKFK AKTDFVTMDPISETGLEKIWEMMLEEDVPVVVLEPLGGKMNEISESDTPFPHRKGHLYNIQYLVKWEGGGVEDETKHLGWMNKVYDYMEPHVSKSPRAAY VNYRDLDLGEKAATGFSAAKGWGEKYFKGNFERLSKVKSAVDPDDFFRNEQSI |
Full Sequence |
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Protein Sequence Length: 530 Download |
MKNHLIAVFL SSVALIVTAV TSHSHSSVSE NFVKCISTQI NGYPRSFPTI FGRESSLYSH 60 VLDSRVQNMR FQNSTSKPLL IMTPSEVGEI QAALHCSRAN GLDLRQRSGG HDYEAISYVS 120 TGKKPYIVVD LFNLNSVQID VKSETAWVES GAQLGELYYA IAKQTSNLAF PAGICPTVGV 180 GGHFGGGGFG TLVRKYGLAA DNVIDANLID ARGRVMNRKE MGEEVFWAIR GGSAGSFGIV 240 VSWKVKLVRV PEKLTFFSVS KTLEQGANGL IHKWQKFGHD APEDLFVRIL ILNSVNGNGN 300 KTVEARFQSL FLGTIDKLIP LVNQTFPELG LRAENCTEMT WGESTLEFAG FKSGSVIEAL 360 LDKTQMFKAK FKAKTDFVTM DPISETGLEK IWEMMLEEDV PVVVLEPLGG KMNEISESDT 420 PFPHRKGHLY NIQYLVKWEG GGVEDETKHL GWMNKVYDYM EPHVSKSPRA AYVNYRDLDL 480 GEKAATGFSA AKGWGEKYFK GNFERLSKVK SAVDPDDFFR NEQSIPLFK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG0277 | GlcD | 3.0e-15 | 78 | 528 | 463 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam08031 | BBE | 3.0e-19 | 471 | 526 | 56 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
pfam01565 | FAD_binding_4 | 7.0e-20 | 78 | 215 | 139 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABC41950.1 | 0 | 7 | 528 | 7 | 523 | FAD-linked oxidoreductase 1 [Glycine max] |
GenBank | ABC41951.1 | 0 | 1 | 528 | 1 | 524 | FAD-linked oxidoreductase 2 [Glycine max] |
RefSeq | XP_002267029.1 | 0 | 6 | 526 | 246 | 768 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002330615.1 | 0 | 26 | 526 | 29 | 530 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002523167.1 | 0 | 13 | 528 | 7 | 524 | Reticuline oxidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vte_A | 0 | 30 | 526 | 5 | 511 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 4dns_B | 0 | 28 | 526 | 9 | 494 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 28 | 526 | 9 | 494 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_B | 0 | 27 | 526 | 6 | 494 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_A | 0 | 27 | 526 | 6 | 494 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |