| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10038491 |
| Family | GT5 |
| Protein Properties | Length: 1033 Molecular Weight: 116947 Isoelectric Point: 6.0484 |
| Chromosome | Chromosome/Scaffold: 28 Start: 1596950 End: 1602532 |
| Description | starch synthase 4 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT5 | 536 | 1021 | 0 |
| HVIHIAAEMAPVAKVGGLGDVVSGLGKALQKRGHLVEIILPKYDCMQYDRIYDLKALDLVVESYFEGRLYKNKIWIGVVEGLPVYFIEPLHPGKFFWRGE FYGEHDDFKRFSFFSRAALELLHQSGKKPDIIHCHDWQTAFIAPLYWEIYAPKGLNSARICFTCHNFEYQGAAPASELASCGLDVQHLNRPDRMQDNSAH DRVNPVKGAVVFSNIVTTVSPTYAQEVLTAVGGKGLHSTLNSHSRKFIGILNGIDLDAWNPSTDGFLSTQYSANDLEGKSYNKTALRRDLGLSTANVRQP LVGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVAQIQQEFEGIANQFRNNGNVRLILKYDEALSHSIYAASDMFIIPSVFEPCGLTQMIAMRYG SVPIVRKTGGLNDSVFDVDDDTVPLQFRNGFTFLNPDEEAFSSVLERAFKHYKNDTEGWQELVRRIMKLDFSWGTSAAHYEELYSK | |||
| Full Sequence |
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| Protein Sequence Length: 1033 Download |
| MATKPSSSRF INQSLAGFSY GGNHRNVRFS PPQHHQLLLP AIRHRHFSFR YQLKKQQLKK 60 ASTESTAESY EAAAPHKDVP NLDAAASIDE EDASGKDSQS RIETEECVDG QEVETIADVE 120 HIHDDDSERR ETPNESEEAE SLALNLNVDG EKRLSSVQLG DLIGMIRKAE KRITARIRAV 180 EDLDKILSEK ESLQGEINLL ETRLAETNAK LRVASQEKAH LQLLENQLEE LRNELTHRSP 240 GPAVGDVLHH RENQPRNNEA SLVPYADTTS LAEELNSLRT ENMFLKQDLE LLKAELNAIR 300 NTDGRVITLE KDRSTIKSSL RDLESLVSTS QADVSKLSSL KVKHKDLWSK VESQQSLLDK 360 VTKQADRALI VLQQNQELRE KVHRLEESLE EANIYKLSSE KLQDYNELMQ RKIKLLEEHL 420 QRSDDEIHSY VQLYHDSIQE FQDTLSNLIE ESKERALDGP VDDMPSDFWS RLLLKIDGWL 480 LEKKMSTDDA KLLRDLVWKR DRKICDAYMQ CEEKDDHDSI STFRKLTSQP ESLGLHVIHI 540 AAEMAPVAKV GGLGDVVSGL GKALQKRGHL VEIILPKYDC MQYDRIYDLK ALDLVVESYF 600 EGRLYKNKIW IGVVEGLPVY FIEPLHPGKF FWRGEFYGEH DDFKRFSFFS RAALELLHQS 660 GKKPDIIHCH DWQTAFIAPL YWEIYAPKGL NSARICFTCH NFEYQGAAPA SELASCGLDV 720 QHLNRPDRMQ DNSAHDRVNP VKGAVVFSNI VTTVSPTYAQ EVLTAVGGKG LHSTLNSHSR 780 KFIGILNGID LDAWNPSTDG FLSTQYSAND LEGKSYNKTA LRRDLGLSTA NVRQPLVGCI 840 TRLVPQKGVH LIRHAIYRTL ELGGQFVLLG SSPVAQIQQE FEGIANQFRN NGNVRLILKY 900 DEALSHSIYA ASDMFIIPSV FEPCGLTQMI AMRYGSVPIV RKTGGLNDSV FDVDDDTVPL 960 QFRNGFTFLN PDEEAFSSVL ERAFKHYKND TEGWQELVRR IMKLDFSWGT SAAHYEELYS 1020 KSVARARAAN RA* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02316 | PLN02316 | 4.0e-141 | 535 | 1019 | 492 | + synthase/transferase | ||
| PLN02939 | PLN02939 | 0 | 2 | 1023 | 1026 | + transferase, transferring glycosyl groups | ||
| TIGR02095 | glgA | 0 | 535 | 1022 | 491 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 536 | 1021 | 491 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| PRK00654 | glgA | 0 | 535 | 1021 | 491 | + glycogen synthase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_193558.3 | 0 | 296 | 1029 | 303 | 1036 | ATSS4; transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | XP_002274716.1 | 0 | 26 | 1030 | 23 | 1009 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002298514.1 | 0 | 137 | 1030 | 12 | 885 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002519725.1 | 4e-20 | 1 | 213 | 1 | 229 | starch synthase, putative [Ricinus communis] |
| RefSeq | XP_002519725.1 | 0 | 347 | 1029 | 312 | 994 | starch synthase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rzv_B | 0 | 535 | 1026 | 1 | 479 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
| PDB | 1rzv_A | 0 | 535 | 1026 | 1 | 479 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
| PDB | 1rzu_B | 0 | 535 | 1026 | 1 | 479 | A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp |
| PDB | 1rzu_A | 0 | 535 | 1026 | 1 | 479 | A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp |
| PDB | 3guh_A | 0 | 535 | 1021 | 1 | 475 | A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GO851132 | 333 | 610 | 942 | 0 |
| GW865616 | 298 | 641 | 938 | 0 |
| CF828776 | 286 | 660 | 945 | 0 |
| EL448877 | 316 | 463 | 778 | 0 |
| CB893818 | 281 | 534 | 814 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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