Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10038891 |
Family | AA3 |
Protein Properties | Length: 615 Molecular Weight: 67648.2 Isoelectric Point: 8.7927 |
Chromosome | Chromosome/Scaffold: 34 Start: 708015 End: 711270 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 67 | 597 | 0 |
APPVAFYDYIIIGGGTAGCPLAATLSRHAAVLVLERGGSPYNNSDITDVANFVSTIADTSPGSPSQTFVSEDGVYNTRARVLGGGSAIGAGFYSRAEANY VRRAGLDEELVRRSYEWVEWKIGFEPQVTKWQSTVREGMVETGVGPANGFTYAHDYGTKIGGTTFNTMGHRHSAADLLEYARPRNIKVYLHATVTKILFR RVRRWPRPIAYGVVYEDPMGIRKKAILKPHPHNEVILAAGAIGSPQLMMLSGIGPGLHLRSHGIQVVLDQPYVGQGMADNPMNLLYVPSPVPVETSLVQV VGIPYRQNSYIETASGLSFAYSWAQGFARDYVSFFNKTGKPSSLTAETIARAIETVHAYANTSQTTGGVILQKVKGPLSSGDLKLRSTSPNEDPSVSFNY YKSPRDLEGCVEGMRSIVRLINSPSFAKLRYPHLSVQALVDLILNLPVNLRPRHVSSSISLEQFCKDTVMTMWDYHGGCQVGKVVDPEYKVLGVDGLRVV DGSTLLRSPGTNPQATVMMLGRYTGRRILSE |
Full Sequence |
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Protein Sequence Length: 615 Download |
MALHPSEIIL DSDGSIVFET DRMVLENTMH ENQSHLFTLL AVNFFLHCFC NSEKAPYFSF 60 VQEATTAPPV AFYDYIIIGG GTAGCPLAAT LSRHAAVLVL ERGGSPYNNS DITDVANFVS 120 TIADTSPGSP SQTFVSEDGV YNTRARVLGG GSAIGAGFYS RAEANYVRRA GLDEELVRRS 180 YEWVEWKIGF EPQVTKWQST VREGMVETGV GPANGFTYAH DYGTKIGGTT FNTMGHRHSA 240 ADLLEYARPR NIKVYLHATV TKILFRRVRR WPRPIAYGVV YEDPMGIRKK AILKPHPHNE 300 VILAAGAIGS PQLMMLSGIG PGLHLRSHGI QVVLDQPYVG QGMADNPMNL LYVPSPVPVE 360 TSLVQVVGIP YRQNSYIETA SGLSFAYSWA QGFARDYVSF FNKTGKPSSL TAETIARAIE 420 TVHAYANTSQ TTGGVILQKV KGPLSSGDLK LRSTSPNEDP SVSFNYYKSP RDLEGCVEGM 480 RSIVRLINSP SFAKLRYPHL SVQALVDLIL NLPVNLRPRH VSSSISLEQF CKDTVMTMWD 540 YHGGCQVGKV VDPEYKVLGV DGLRVVDGST LLRSPGTNPQ ATVMMLGRYT GRRILSERLP 600 LYLRRPPWHI PPRN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK02106 | PRK02106 | 1.0e-5 | 443 | 613 | 178 | + choline dehydrogenase; Validated | ||
TIGR01810 | betA | 1.0e-27 | 74 | 598 | 575 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
PRK02106 | PRK02106 | 3.0e-31 | 73 | 345 | 320 | + choline dehydrogenase; Validated | ||
COG2303 | BetA | 1.0e-32 | 73 | 600 | 587 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 0 | 44 | 599 | 588 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI34759.1 | 0 | 47 | 599 | 21 | 572 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_200008.1 | 0 | 39 | 598 | 12 | 576 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
RefSeq | XP_002267807.1 | 0 | 39 | 598 | 13 | 559 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002267848.1 | 0 | 38 | 598 | 12 | 559 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002510860.1 | 0 | 39 | 599 | 12 | 571 | glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3gdp_B | 0 | 57 | 598 | 11 | 517 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 3gdp_A | 0 | 57 | 598 | 11 | 517 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 3gdn_B | 0 | 57 | 598 | 11 | 517 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 3gdn_A | 0 | 57 | 598 | 11 | 517 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 1ju2_B | 0 | 57 | 598 | 11 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO796743 | 537 | 74 | 598 | 0 |
CO080148 | 299 | 49 | 347 | 0 |
DT559636 | 269 | 53 | 321 | 0 |
CK271873 | 311 | 73 | 383 | 0 |
EE156290 | 283 | 51 | 333 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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