Basic Information | |
---|---|
Species | Linum usitatissimum |
Cazyme ID | Lus10039154 |
Family | GH28 |
Protein Properties | Length: 403 Molecular Weight: 41955 Isoelectric Point: 7.8852 |
Chromosome | Chromosome/Scaffold: 34 Start: 1886508 End: 1887808 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 71 | 391 | 0 |
AEACASTAPATVLIPPGNYLCGQTNLKAPCAAPSITFQVQGTIRAPSDIAGDTWFLFDNINNLNIVGGGIFDGQGPTCYKTKKSVAVSIRLNYVTNAMIQ GITSRDSKQFHFIVIGGKNITFDQLTITAAGDSPNTDGIHLGRAAQINILNTNIGTGDDCISVGDGVSDLNVQNVTCGPGHGIAVGSLGRYPNEQPVKGI HFKNCTLTNTCNGVRIKSWPDLETGSAADISFEDIIMNNVSFPIVIDQVYCPWNKCKKTGVPSKVKISGVTYNNIRGTSATPQIVQMNCSSANPCEDIKL SNIDIQSPTGPAVSACANVKP |
Full Sequence |
---|
Protein Sequence Length: 403 Download |
MKKTGSVMKI LFLLVLVTFA NVVSGQRGAA QPGMPAGGAA PPAGGVFDIC KYGAVADEKT 60 DITQALTKAF AEACASTAPA TVLIPPGNYL CGQTNLKAPC AAPSITFQVQ GTIRAPSDIA 120 GDTWFLFDNI NNLNIVGGGI FDGQGPTCYK TKKSVAVSIR LNYVTNAMIQ GITSRDSKQF 180 HFIVIGGKNI TFDQLTITAA GDSPNTDGIH LGRAAQINIL NTNIGTGDDC ISVGDGVSDL 240 NVQNVTCGPG HGIAVGSLGR YPNEQPVKGI HFKNCTLTNT CNGVRIKSWP DLETGSAADI 300 SFEDIIMNNV SFPIVIDQVY CPWNKCKKTG VPSKVKISGV TYNNIRGTSA TPQIVQMNCS 360 SANPCEDIKL SNIDIQSPTG PAVSACANVK PIVTGTIPPG CV* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 5.0e-60 | 46 | 401 | 375 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-63 | 49 | 401 | 371 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 2.0e-68 | 4 | 399 | 410 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-96 | 74 | 390 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-98 | 47 | 401 | 368 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ADC53480.1 | 0 | 49 | 400 | 36 | 398 | polygalacturonase [Gossypium hirsutum] |
DDBJ | BAA89476.1 | 0 | 36 | 401 | 20 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 36 | 401 | 20 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 36 | 401 | 20 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89479.1 | 0 | 39 | 397 | 23 | 388 | polygalacturonase [Salix gilgiana] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ib4_B | 2e-18 | 131 | 389 | 82 | 333 | A Chain A, Crystal Structure Of A Methyltransferase-Like Protein (Spo2022) From Silicibacter Pomeroyi Dss-3 At 1.80 A Resolution |
PDB | 1ib4_A | 2e-18 | 131 | 389 | 82 | 333 | A Chain A, Crystal Structure Of A Methyltransferase-Like Protein (Spo2022) From Silicibacter Pomeroyi Dss-3 At 1.80 A Resolution |
PDB | 1ia5_A | 2e-18 | 131 | 389 | 82 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1rmg_A | 2e-16 | 48 | 382 | 22 | 345 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 0.000000000000001 | 73 | 389 | 17 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |