Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10039279 |
Family | GH28 |
Protein Properties | Length: 481 Molecular Weight: 51231.4 Isoelectric Point: 6.0451 |
Chromosome | Chromosome/Scaffold: 33 Start: 305184 End: 307372 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 88 | 440 | 0 |
AADGGAQLIVPPGKWLTGSFNLTSHFTLFLHKDAVILGSQNIEDWPLVAPLPSYGPSFDEIKDGSRHASLLFGDNLTDVVITGNNGTIDGQGETWWKAFK AKTLKNARPFLFEIMNCDQLQISNVTFTNSPMWHVHPVYCSNVLIQGVTVLAPVEVPNTDGINPDSCTNIRIEDSYIVSGDDCIAVKSGIDQYGIKVAKP TKQLAIRRVTCISPDSALVALGSEMSGGIQDVRIEDLTAINTQSAIRIKSAVGRGGYVKDIFARRLTFDGMDRAFWMSGNYKTHADEGFDPNALPEINNI NYRDVVGQKVNVSGMLSGITKDPFTGICMSNVTLNLGPKAKELQWNCTDVAGT |
Full Sequence |
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Protein Sequence Length: 481 Download |
MASLHIKLSQ SDVAKILVAV LLLSGSVGPT AVAAQAAVGV PTAAPVHYSA LNCRKHSAVI 60 TDFGGVGDGT TLNTKAFQTA IANLSQLAAD GGAQLIVPPG KWLTGSFNLT SHFTLFLHKD 120 AVILGSQNIE DWPLVAPLPS YGPSFDEIKD GSRHASLLFG DNLTDVVITG NNGTIDGQGE 180 TWWKAFKAKT LKNARPFLFE IMNCDQLQIS NVTFTNSPMW HVHPVYCSNV LIQGVTVLAP 240 VEVPNTDGIN PDSCTNIRIE DSYIVSGDDC IAVKSGIDQY GIKVAKPTKQ LAIRRVTCIS 300 PDSALVALGS EMSGGIQDVR IEDLTAINTQ SAIRIKSAVG RGGYVKDIFA RRLTFDGMDR 360 AFWMSGNYKT HADEGFDPNA LPEINNINYR DVVGQKVNVS GMLSGITKDP FTGICMSNVT 420 LNLGPKAKEL QWNCTDVAGT TSRVTPKPCD ALPDKAGLDC PFPEDKLPID GLVLQSCTTA 480 * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 1.0e-24 | 60 | 442 | 405 | + polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-25 | 60 | 424 | 380 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 1.0e-28 | 60 | 480 | 438 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-29 | 160 | 437 | 284 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-58 | 58 | 427 | 399 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_190464.1 | 0 | 44 | 477 | 31 | 467 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002278930.1 | 0 | 47 | 478 | 42 | 474 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002305262.1 | 0 | 46 | 478 | 2 | 434 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002327490.1 | 0 | 17 | 478 | 1 | 449 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002513653.1 | 0 | 17 | 480 | 15 | 472 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 3e-37 | 60 | 349 | 30 | 342 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 3e-37 | 60 | 349 | 30 | 342 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 3e-37 | 60 | 349 | 30 | 342 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 3e-37 | 60 | 349 | 30 | 342 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.000000000000007 | 102 | 421 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |