Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10039627 |
Family | PL4 |
Protein Properties | Length: 639 Molecular Weight: 73216 Isoelectric Point: 7.4229 |
Chromosome | Chromosome/Scaffold: 15 Start: 831116 End: 836157 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 53 | 618 | 0 |
PTYGDIIAIKYTGVDNVLEILNEDDNRGYWDVVWNKPGEPIIFDRLAATDFRVVMQDEDQVEVSFTKKWRPSDDTVPLNIDKRYILRRGCSGIYMYTILE RLQGWPDVDMDQIRVVFKLQQKLFNYMAISDYKQRVMPMPEDRVTGQPLAYPEAVLLTHPINPDLRGEVDDKYQYSCEDKDNKVHGWISEDPAVGFWMIT PSNEFRVGGPVKQDLTSHVGPIVLNMFTSTHYAGKDLKTAYRNGEPWKKVIGPVFVYLNSGDTSTLWRDAKQQMHAEVKSWPYDFVNSEDFPTALQRGSV VGQYINERLMYAASAYVGLALPGEVGSWQTDAKGYQFWTQADRRGRFFIDNVRVGTYSLYAWVPGIIGDYKYRVNITIQPGSKIDLGMLLYDPPRNGPTI WEIGIPDRKAAEFHVPDAYPTLMNKLFRQYGLWSRYADIYPRQDLVYEVGVSNFFEDWFFAHVPRNVGNNTFRATTWKINFDLTTVEKSGDYTLQLALAS ATASELQVRFNNPNAKEPLFTTGLIGRDNAIARHGIHGLYWLYSISVPSNQLVDGKNSIYLTQTKS |
Full Sequence |
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Protein Sequence Length: 639 Download |
MDQHPSLANL TYRKLGLGRA VHGWTGQSDW VFKTMKRRRK RSQTNLGNMR LLPTYGDIIA 60 IKYTGVDNVL EILNEDDNRG YWDVVWNKPG EPIIFDRLAA TDFRVVMQDE DQVEVSFTKK 120 WRPSDDTVPL NIDKRYILRR GCSGIYMYTI LERLQGWPDV DMDQIRVVFK LQQKLFNYMA 180 ISDYKQRVMP MPEDRVTGQP LAYPEAVLLT HPINPDLRGE VDDKYQYSCE DKDNKVHGWI 240 SEDPAVGFWM ITPSNEFRVG GPVKQDLTSH VGPIVLNMFT STHYAGKDLK TAYRNGEPWK 300 KVIGPVFVYL NSGDTSTLWR DAKQQMHAEV KSWPYDFVNS EDFPTALQRG SVVGQYINER 360 LMYAASAYVG LALPGEVGSW QTDAKGYQFW TQADRRGRFF IDNVRVGTYS LYAWVPGIIG 420 DYKYRVNITI QPGSKIDLGM LLYDPPRNGP TIWEIGIPDR KAAEFHVPDA YPTLMNKLFR 480 QYGLWSRYAD IYPRQDLVYE VGVSNFFEDW FFAHVPRNVG NNTFRATTWK INFDLTTVEK 540 SGDYTLQLAL ASATASELQV RFNNPNAKEP LFTTGLIGRD NAIARHGIHG LYWLYSISVP 600 SNQLVDGKNS IYLTQTKSDG PFHGVMYDYI RLEGPQGT* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 5.0e-29 | 348 | 439 | 92 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 5.0e-40 | 453 | 633 | 183 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 2.0e-70 | 42 | 315 | 281 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 1.0e-75 | 56 | 221 | 169 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_179847.1 | 0 | 56 | 635 | 78 | 674 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002308510.1 | 0 | 56 | 638 | 73 | 674 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002319997.1 | 0 | 56 | 638 | 17 | 620 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527229.1 | 0 | 37 | 636 | 51 | 668 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527245.1 | 0 | 56 | 638 | 18 | 621 | lyase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3njx_A | 0.0003 | 380 | 613 | 277 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant H210a |
PDB | 3njv_A | 0.0003 | 380 | 613 | 277 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant H210a |
PDB | 2xhn_B | 0.0003 | 380 | 613 | 277 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
PDB | 2xhn_A | 0.0003 | 380 | 613 | 277 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
PDB | 1nkg_A | 0.0003 | 380 | 613 | 277 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EH792178 | 287 | 322 | 592 | 0 |
GW864372 | 311 | 167 | 465 | 0 |
DY969340 | 310 | 249 | 544 | 0 |
EL398250 | 267 | 155 | 415 | 0 |
JG640880 | 271 | 176 | 434 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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