Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10039909 |
Family | GH28 |
Protein Properties | Length: 495 Molecular Weight: 55231.2 Isoelectric Point: 9.2959 |
Chromosome | Chromosome/Scaffold: 12 Start: 45235 End: 48798 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 106 | 454 | 0 |
AKRGGGQLNVPPGRWLTAPFNLTSHITLFLAEDAVILGIQDEKYWTLMPPLPSYGYGREHPGSRYGSLIHGQNLKDVVITGHNGTIDGQGQTWWKKYRQK LLNHTRGPLVQIMFSSDIVITNITLRDSPFWTLHPYDCKNVTIRNVTILAPIFEAPNTDGIDPDSCEDMIIEDCYISVGDDGIAIKSGWDQYGIAYGRPS RNIIIRNIVVRSMVSAGISIGSEMSGGVSNVTVENVLIWNSRRAVRIKTAPGRGAYVRQITYRNLTFDNVRVGIVMKTDYNEHPDGGYDPKAAPVIRDIS FTSIHGQGVRVPVRIHGSEEIVIRNVTFQDMSVGLTYKKKHIFQCAFVE |
Full Sequence |
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Protein Sequence Length: 495 Download |
MVETAAPVGR FQYHRLDVKR WIPPFLASHK TLFTFLWIAA FASVFLWQQD VVGSRGFNVF 60 RRAPLRPMPK LRPVVFNLTD FGGVGDGITV NTAAFERAVS AISKLAKRGG GQLNVPPGRW 120 LTAPFNLTSH ITLFLAEDAV ILGIQDEKYW TLMPPLPSYG YGREHPGSRY GSLIHGQNLK 180 DVVITGHNGT IDGQGQTWWK KYRQKLLNHT RGPLVQIMFS SDIVITNITL RDSPFWTLHP 240 YDCKNVTIRN VTILAPIFEA PNTDGIDPDS CEDMIIEDCY ISVGDDGIAI KSGWDQYGIA 300 YGRPSRNIII RNIVVRSMVS AGISIGSEMS GGVSNVTVEN VLIWNSRRAV RIKTAPGRGA 360 YVRQITYRNL TFDNVRVGIV MKTDYNEHPD GGYDPKAAPV IRDISFTSIH GQGVRVPVRI 420 HGSEEIVIRN VTFQDMSVGL TYKKKHIFQC AFVEGRVIGT IFPAPCENLD RYDEQGQLVR 480 RSASPNSTDI DYDF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 3.0e-24 | 48 | 411 | 380 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-26 | 56 | 466 | 434 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-29 | 76 | 439 | 381 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 6.0e-36 | 174 | 445 | 282 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 9.0e-61 | 75 | 396 | 345 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69988.1 | 0 | 1 | 494 | 1 | 509 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002277239.1 | 0 | 1 | 494 | 1 | 493 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324728.1 | 0 | 1 | 494 | 1 | 495 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002326133.1 | 0 | 1 | 494 | 1 | 495 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516244.1 | 0 | 1 | 494 | 2 | 494 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 69 | 435 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 69 | 435 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 69 | 435 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 69 | 435 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 1e-17 | 120 | 433 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |