y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10040461 |
Family | CBM43 |
Protein Properties | Length: 465 Molecular Weight: 49153.6 Isoelectric Point: 5.3695 |
Chromosome | Chromosome/Scaffold: 86 Start: 2023965 End: 2027152 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 376 | 458 | 7.9e-33 |
WCVSKPGVSQAQLQASLDYACGQGVDCTPLLPGGACFEPNTVESHAAYAMNLYFQRSEKRPWNCDFSQTAALTSKNPSYNGCN | |||
GH17 | 28 | 345 | 0 |
IGVNYGQVADNLPPPPATAKLLQSTTVQKVRLYGADPAIIKSLANTGIGIVIGAANGDIPSLAGDPNFAGQWVNSNVLAFYPASNIVLVTIGNEVLLSGD QGLVSQLLPAMQNVQNALNAASVGGKVKVSTVHSMAVLGRSDPPSSGSFDPEYGDTMKALLQFQRAVGSPIAINPYPFFAYQSDPRPETLAFCLFQPNAG RVDSGSGIKYMNMFDAQVDAVRSALNAMGFKDIEILVAETGWPYRGDPNEVGPSIENARAYNGNLIAHLRSMAGTPLMPGKSVDTFFFALFDEDLKPGPS SERSFGLFKPDLSMTYDV |
Full Sequence |
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Protein Sequence Length: 465 Download |
MLIPSLAAAF LLLLLLHHFP FANSQSFIGV NYGQVADNLP PPPATAKLLQ STTVQKVRLY 60 GADPAIIKSL ANTGIGIVIG AANGDIPSLA GDPNFAGQWV NSNVLAFYPA SNIVLVTIGN 120 EVLLSGDQGL VSQLLPAMQN VQNALNAASV GGKVKVSTVH SMAVLGRSDP PSSGSFDPEY 180 GDTMKALLQF QRAVGSPIAI NPYPFFAYQS DPRPETLAFC LFQPNAGRVD SGSGIKYMNM 240 FDAQVDAVRS ALNAMGFKDI EILVAETGWP YRGDPNEVGP SIENARAYNG NLIAHLRSMA 300 GTPLMPGKSV DTFFFALFDE DLKPGPSSER SFGLFKPDLS MTYDVGLSKT TSPQSPPPSS 360 SSGSSKTPST PQATQWCVSK PGVSQAQLQA SLDYACGQGV DCTPLLPGGA CFEPNTVESH 420 AAYAMNLYFQ RSEKRPWNCD FSQTAALTSK NPSYNGCNYP GGST* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd02192 | PurM-like3 | 0.003 | 60 | 217 | 166 | + AIR synthase (PurM) related protein, subgroup 3 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain. | ||
COG5309 | COG5309 | 1.0e-8 | 56 | 338 | 293 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 1.0e-20 | 375 | 445 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-38 | 375 | 459 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 6.0e-96 | 28 | 345 | 318 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95331.1 | 0 | 10 | 463 | 6 | 455 | unknown [Populus trichocarpa] |
GenBank | ABK95837.1 | 0 | 10 | 464 | 6 | 452 | unknown [Populus trichocarpa] |
RefSeq | XP_002282736.1 | 0 | 7 | 464 | 7 | 465 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002509479.1 | 0 | 17 | 464 | 17 | 460 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
RefSeq | XP_002510373.1 | 0 | 7 | 463 | 8 | 460 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 28 | 345 | 1 | 310 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_B | 0 | 28 | 348 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_A | 0 | 28 | 348 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur7_B | 0 | 28 | 348 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 28 | 348 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |