Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10040610 |
Family | GH28 |
Protein Properties | Length: 457 Molecular Weight: 49848.9 Isoelectric Point: 6.1178 |
Chromosome | Chromosome/Scaffold: 156 Start: 661059 End: 663165 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 107 | 442 | 0 |
DDFCEESGHPTLVIPSGKVFLLTPVTFQGPCKSPKLQIELQGTIIAPGSVKAWTNNKDTWIQFDYVNGLTITGGGTIDGQGQIWWDQCQKYKSCTRPTAL SFHSCNELVLNAIHHVNSQRNHISIDDCNAVEISHLTITAPENSPNTDGIDIAASSYLNIHDSFIGTGDDCIAINAFTSHVNISRLTCGPGHGISIGSLG KNGAYETVEDVHVVNCTFENTMFGARIKTWEGGRGYARRVSFKDIILVNAGNPIIIDQAYMDTHEGLSRGHSTLLSGDHVEISDVTYKGVVGTCSDERAV YLNCAGCKDIHVENVQIAPAVAGKQLFAACNNAHGR |
Full Sequence |
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Protein Sequence Length: 457 Download |
MAGLRLICTM LVLFLMLHSR LSYGRPLRDY NNYDRSINID NARRYINGFL DYLAATTNSV 60 TTDDDHHETF GYVPRQQASS GRFNVLDYGA VADGYTDSAN AFLKAWDDFC EESGHPTLVI 120 PSGKVFLLTP VTFQGPCKSP KLQIELQGTI IAPGSVKAWT NNKDTWIQFD YVNGLTITGG 180 GTIDGQGQIW WDQCQKYKSC TRPTALSFHS CNELVLNAIH HVNSQRNHIS IDDCNAVEIS 240 HLTITAPENS PNTDGIDIAA SSYLNIHDSF IGTGDDCIAI NAFTSHVNIS RLTCGPGHGI 300 SIGSLGKNGA YETVEDVHVV NCTFENTMFG ARIKTWEGGR GYARRVSFKD IILVNAGNPI 360 IIDQAYMDTH EGLSRGHSTL LSGDHVEISD VTYKGVVGTC SDERAVYLNC AGCKDIHVEN 420 VQIAPAVAGK QLFAACNNAH GRSRDDLSPK VSCLMP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 1.0e-79 | 110 | 440 | 336 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-80 | 78 | 442 | 373 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 3.0e-91 | 73 | 449 | 391 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 4.0e-102 | 79 | 454 | 381 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 2.0e-110 | 83 | 445 | 368 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 83 | 454 | 30 | 396 | PGN [Glycine max] |
GenBank | ABC75354.1 | 0 | 83 | 454 | 23 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ABO81149.1 | 0 | 86 | 454 | 1 | 368 | Glycoside hydrolase, family 28 [Medicago truncatula] |
RefSeq | XP_002324855.1 | 0 | 83 | 454 | 27 | 394 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 83 | 454 | 28 | 392 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 3e-21 | 175 | 438 | 72 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-21 | 175 | 438 | 72 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-21 | 175 | 438 | 72 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-21 | 175 | 438 | 72 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 3e-21 | 175 | 438 | 72 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |