Basic Information | |
---|---|
Species | Linum usitatissimum |
Cazyme ID | Lus10041058 |
Family | GH28 |
Protein Properties | Length: 445 Molecular Weight: 45904.1 Isoelectric Point: 5.6416 |
Chromosome | Chromosome/Scaffold: 280 Start: 775669 End: 777223 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 118 | 432 | 0 |
KACASLTPATVIVPEGEFLCGLVVVSGPCRSPIGVQLLGTINSQDAIPGNNWFVFKRVENFALFGPGTIDGKGAGKVAPNAANLRFQSITNGIITGITSK DSNFFHMSTLECKNLTFTKLKFFAPAESVNTDGIHLSATCDVNIFDVDIQTGDDCISMIDGVSNVHITNVCCGPGHGISVGSLGKYADEKPVSGIFVKNC TLRKTDNGVRIKSWPAQEEGAASDIHFEDITLEDVEKPIIIDQEYCPNGQCKSKGPSKVKISNISFKNVHGTVKEEEAIIIKCSSLNPCDQIVLTDIDIT SPSGSVTSECVNVKP |
Full Sequence |
---|
Protein Sequence Length: 445 Download |
MGTRRGAINL LQCFFLLVNV FVANAHAPAS QPPASGPSAS GTSASGPSAS GTPAYGPSAS 60 GPSASGTPAS GTPASGGGAA PPIPGEPTVG TPFDVTNFGA VGDGKTDMMQ AFLKAWVKAC 120 ASLTPATVIV PEGEFLCGLV VVSGPCRSPI GVQLLGTINS QDAIPGNNWF VFKRVENFAL 180 FGPGTIDGKG AGKVAPNAAN LRFQSITNGI ITGITSKDSN FFHMSTLECK NLTFTKLKFF 240 APAESVNTDG IHLSATCDVN IFDVDIQTGD DCISMIDGVS NVHITNVCCG PGHGISVGSL 300 GKYADEKPVS GIFVKNCTLR KTDNGVRIKS WPAQEEGAAS DIHFEDITLE DVEKPIIIDQ 360 EYCPNGQCKS KGPSKVKISN ISFKNVHGTV KEEEAIIIKC SSLNPCDQIV LTDIDITSPS 420 GSVTSECVNV KPIVTGKPLP PGCT* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 7.0e-73 | 90 | 431 | 356 | + polygalacturonase | ||
PLN02155 | PLN02155 | 2.0e-74 | 93 | 443 | 365 | + polygalacturonase | ||
PLN02793 | PLN02793 | 5.0e-77 | 93 | 443 | 371 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-91 | 120 | 431 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-100 | 93 | 444 | 370 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
Swiss-Prot | Q39766 | 0 | 93 | 444 | 29 | 396 | PGLR_GOSBA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
Swiss-Prot | Q39786 | 0 | 93 | 444 | 29 | 396 | PGLR_GOSHI RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
RefSeq | XP_002282563.1 | 0 | 93 | 443 | 28 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282573.1 | 0 | 93 | 444 | 28 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282594.1 | 0 | 93 | 444 | 28 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ib4_B | 1e-18 | 123 | 430 | 43 | 333 | H Chain H, Structure Of The D. Melanogaster 60s Ribosomal Proteins |
PDB | 1ib4_A | 1e-18 | 123 | 430 | 43 | 333 | H Chain H, Structure Of The D. Melanogaster 60s Ribosomal Proteins |
PDB | 1ia5_A | 1e-18 | 123 | 430 | 43 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1rmg_A | 0.000000000000006 | 94 | 422 | 22 | 344 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1bhe_A | 0.00000000000002 | 177 | 431 | 110 | 375 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |