Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10041059 |
Family | GH28 |
Protein Properties | Length: 435 Molecular Weight: 45101.3 Isoelectric Point: 5.6416 |
Chromosome | Chromosome/Scaffold: 280 Start: 782351 End: 783875 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 108 | 422 | 0 |
KACASLTPATVIVPEGEFLCGLVVVSGPCRSPIGVQLLGTINSQDAIPGNNWFVFKRVENFALFGPGTIDGKGAGKVAPNAANLRFQSITNGIITGITSK DSNFFHMSTLECKNLTFTKLKFFAPAESVNTDGIHLSATCDVNIFDVDIQTGDDCISMIDGVSNVHITNVCCGPGHGISVGSLGKYADEKPVSGIFVKNC TLRKTDNGVRIKSWPAQEEGAASDIHFEDITLEDVEKPIIIDQEYCPNGQCKSKGPSKVKISNISFKNVHGTVKEEEAIIIKCSSLNPCDQIVLTDIDIT SPSGSVTSECVNVKP |
Full Sequence |
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Protein Sequence Length: 435 Download |
MGTRRGAINL LQCFFLLVNV FVANAHAPAS QPPASGPSAS GTPAYGPSAS GPSASGTPAS 60 GTPASGGGAA PPIPGEPTVG TPFDVTNFGA VGDGKTDMMQ AFLKAWVKAC ASLTPATVIV 120 PEGEFLCGLV VVSGPCRSPI GVQLLGTINS QDAIPGNNWF VFKRVENFAL FGPGTIDGKG 180 AGKVAPNAAN LRFQSITNGI ITGITSKDSN FFHMSTLECK NLTFTKLKFF APAESVNTDG 240 IHLSATCDVN IFDVDIQTGD DCISMIDGVS NVHITNVCCG PGHGISVGSL GKYADEKPVS 300 GIFVKNCTLR KTDNGVRIKS WPAQEEGAAS DIHFEDITLE DVEKPIIIDQ EYCPNGQCKS 360 KGPSKVKISN ISFKNVHGTV KEEEAIIIKC SSLNPCDQIV LTDIDITSPS GSVTSECVNV 420 KPIVTGKPLP PGCT* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 5.0e-73 | 80 | 421 | 356 | + polygalacturonase | ||
PLN02155 | PLN02155 | 1.0e-74 | 83 | 433 | 365 | + polygalacturonase | ||
PLN02793 | PLN02793 | 4.0e-77 | 83 | 433 | 371 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-91 | 110 | 421 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 6.0e-101 | 83 | 434 | 370 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
Swiss-Prot | Q39766 | 0 | 83 | 434 | 29 | 396 | PGLR_GOSBA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
Swiss-Prot | Q39786 | 0 | 83 | 434 | 29 | 396 | PGLR_GOSHI RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
RefSeq | XP_002282563.1 | 0 | 83 | 433 | 28 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282573.1 | 0 | 83 | 434 | 28 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282594.1 | 0 | 83 | 434 | 28 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ib4_B | 1e-18 | 113 | 420 | 43 | 333 | A Chain A, Crystal Structure Analysis Of Clpb |
PDB | 1ib4_A | 1e-18 | 113 | 420 | 43 | 333 | A Chain A, Crystal Structure Analysis Of Clpb |
PDB | 1ia5_A | 1e-18 | 113 | 420 | 43 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1rmg_A | 0.000000000000009 | 84 | 412 | 22 | 344 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1bhe_A | 0.00000000000002 | 167 | 421 | 110 | 375 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |