| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10042483 |
| Family | GH28 |
| Protein Properties | Length: 399 Molecular Weight: 43517.3 Isoelectric Point: 7.6 |
| Chromosome | Chromosome/Scaffold: 123 Start: 2368723 End: 2370117 |
| Description | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 64 | 388 | 0 |
| EGCEWNGKARILVPAGHYMCDAVEFSGPCRGSMAFVMKGLLTPPDKLKHIEGTNCWVAFKYIDNFLLSGHGTFDARGYTSPTPKERDHSLNFRFINNGTI HHVRSVDARNVHIELFGCNNMLLRNIMIKAPGDSHNTDGIKFGSCTNIKLENSVIGTGDDCVAILGGTHNLDISKVFCGPGHGISIGSMGYYPNNNNDIV TGVTVRDCSFQNTSYGVRIKTWASPYEGLAANISYSNIRMMGVQNPIIIDQFYCPEANCNSNVQSHVRVQNVTYDNIWGTSQRDVAMKLNCSSTFGCKGI VMKNINLVQVNGSSANAMCNNVDSK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 399 Download |
| MDLVMGFAKL SVLLLVLASI RGGIATDDDD DDDSNAKVFN VMNYGARADG RTDNSQAFLR 60 AWREGCEWNG KARILVPAGH YMCDAVEFSG PCRGSMAFVM KGLLTPPDKL KHIEGTNCWV 120 AFKYIDNFLL SGHGTFDARG YTSPTPKERD HSLNFRFINN GTIHHVRSVD ARNVHIELFG 180 CNNMLLRNIM IKAPGDSHNT DGIKFGSCTN IKLENSVIGT GDDCVAILGG THNLDISKVF 240 CGPGHGISIG SMGYYPNNNN DIVTGVTVRD CSFQNTSYGV RIKTWASPYE GLAANISYSN 300 IRMMGVQNPI IIDQFYCPEA NCNSNVQSHV RVQNVTYDNI WGTSQRDVAM KLNCSSTFGC 360 KGIVMKNINL VQVNGSSANA MCNNVDSKTY GVRKPACA* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN03010 | PLN03010 | 7.0e-76 | 35 | 389 | 360 | + polygalacturonase |
| pfam00295 | Glyco_hydro_28 | 1.0e-76 | 74 | 388 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
| PLN02218 | PLN02218 | 7.0e-83 | 40 | 397 | 372 | + polygalacturonase ADPG |
| PLN02155 | PLN02155 | 1.0e-85 | 34 | 395 | 369 | + polygalacturonase |
| PLN02188 | PLN02188 | 8.0e-95 | 34 | 395 | 375 | + polygalacturonase/glycoside hydrolase family protein |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF71796.1 | 0 | 37 | 397 | 33 | 410 | AC013430_5 F3F9.9 [Arabidopsis thaliana] |
| RefSeq | NP_175004.1 | 0 | 10 | 391 | 13 | 395 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_177961.2 | 0 | 37 | 397 | 33 | 402 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002300425.1 | 0 | 37 | 395 | 1 | 364 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002314146.1 | 0 | 5 | 395 | 1 | 388 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 6e-17 | 160 | 370 | 161 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 1e-16 | 72 | 387 | 24 | 332 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 1e-16 | 72 | 387 | 24 | 332 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 1e-16 | 72 | 387 | 24 | 332 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 1e-16 | 72 | 387 | 24 | 332 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
