| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10042509 |
| Family | PL1 |
| Protein Properties | Length: 206 Molecular Weight: 22389 Isoelectric Point: 8.0178 |
| Chromosome | Chromosome/Scaffold: 123 Start: 2480419 End: 2481295 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 3 | 125 | 0 |
| DGDGVSIFDSSHIWVDHNSLSNCADGLIDAIMGSTAITISNNFFTHHNEVILLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHW EMYAIGGSANPTINSQGNRFLAP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 206 Download |
| MADGDGVSIF DSSHIWVDHN SLSNCADGLI DAIMGSTAIT ISNNFFTHHN EVILLGHSDS 60 YVRDKQMQVT IAYNHFGEGL IQRMPRCRHG YFHVVNNDYT HWEMYAIGGS ANPTINSQGN 120 RFLAPNNPFA KEVTKRVETN NGVWKSWNWR SEGDLLLNGA YFKPSGAGAG ASYARASSLG 180 AKPSSLVGMI TSTSGALVCR RGRSC* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 4.0e-22 | 5 | 137 | 145 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-54 | 2 | 122 | 129 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 3.0e-59 | 2 | 126 | 134 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK66161.1 | 0 | 1 | 205 | 164 | 368 | pectate lyase [Fragaria x ananassa] |
| GenBank | ACF84425.1 | 0 | 1 | 205 | 70 | 274 | unknown [Zea mays] |
| EMBL | CAB36835.1 | 0 | 1 | 205 | 170 | 374 | putative pectate lyase A11 (fragment) [Arabidopsis thaliana] |
| RefSeq | NP_567409.1 | 0 | 1 | 205 | 266 | 470 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002521130.1 | 0 | 1 | 205 | 237 | 441 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 3 | 166 | 149 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 3 | 166 | 149 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 0.000000000000002 | 3 | 123 | 115 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.00000000000001 | 5 | 122 | 190 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pe9_B | 0.000000000008 | 14 | 171 | 154 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| JG080210 | 206 | 1 | 206 | 0 |
| JG183225 | 206 | 1 | 206 | 0 |
| JG075187 | 206 | 1 | 206 | 0 |
| JG068146 | 201 | 1 | 201 | 0 |
| JG075427 | 206 | 1 | 206 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |