Basic Information | |
---|---|
Species | Linum usitatissimum |
Cazyme ID | Lus10042916 |
Family | PL4 |
Protein Properties | Length: 471 Molecular Weight: 53416 Isoelectric Point: 4.9481 |
Chromosome | Chromosome/Scaffold: 67 Start: 2770060 End: 2773844 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL4 | 225 | 415 | 0 |
GAYVGLAPPGDVGSWQRECKNYQFWTKTDEDGFFSINHIITGDYNLHAWVPGFVGDYKNPNLVSITSGCYVDMGDMVFEPPRSGPTLWEIGIPDRSASEF YVPDPNPKYINKLFVNHPEKFRQYGLWERYEELYPNEDLVYNVGTSDYTKDWKRENNTYQGTTWSIKFDLDNVEKNGIYKLRVAIASATFS |
Full Sequence |
---|
Protein Sequence Length: 471 Download |
MMDNGIEQVT MSNPQGIVTR IRFSGLDNLL EVLNEETNRG YWDLVWSSPG TAGIFDVIKG 60 TSFEAITETE EQVEVSLHSK KSFRRTLHNV LTTDRFHYMG ASGNRQRYMP LPDDRIPPRG 120 QPLAYPEAVL MVNPVEADLK GEVDDKYQYS CDNKDNKVHG WMCMDPPIGF WQITPTDEFR 180 SGGPLKQNIL ALHDRVVSIS NLGSLEFVHS STNLMRALFR FKDVGAYVGL APPGDVGSWQ 240 RECKNYQFWT KTDEDGFFSI NHIITGDYNL HAWVPGFVGD YKNPNLVSIT SGCYVDMGDM 300 VFEPPRSGPT LWEIGIPDRS ASEFYVPDPN PKYINKLFVN HPEKFRQYGL WERYEELYPN 360 EDLVYNVGTS DYTKDWKREN NTYQGTTWSI KFDLDNVEKN GIYKLRVAIA SATFSELQEG 420 GTKLVAGTNT IYLTQSRATG PFQGIMHDYI RLEAPSPTSF VDSFSKAINI * 480 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 4.0e-23 | 226 | 300 | 75 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 2.0e-30 | 1 | 190 | 225 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 1.0e-30 | 312 | 453 | 182 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-53 | 1 | 143 | 184 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY79828.1 | 0 | 1 | 462 | 6 | 561 | hypothetical protein OsI_34986 [Oryza sativa Indica Group] |
GenBank | EEE51598.1 | 0 | 1 | 462 | 55 | 588 | hypothetical protein OsJ_32851 [Oryza sativa Japonica Group] |
GenBank | EEE69124.1 | 0 | 2 | 456 | 28 | 509 | hypothetical protein OsJ_28234 [Oryza sativa Japonica Group] |
RefSeq | XP_002306520.1 | 0 | 2 | 455 | 1 | 615 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527352.1 | 0 | 1 | 456 | 16 | 632 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
EE874593 | 201 | 225 | 418 | 0 |
BB914477 | 187 | 239 | 418 | 0 |
FY792769 | 201 | 225 | 418 | 0 |
FD943935 | 246 | 256 | 456 | 0 |
EL409069 | 270 | 225 | 447 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|