y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10043035 |
Family | CE8 |
Protein Properties | Length: 343 Molecular Weight: 37527.7 Isoelectric Point: 9.2009 |
Chromosome | Chromosome/Scaffold: 25 Start: 808355 End: 810155 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 41 | 336 | 0 |
TVDKNPAAGDFTSIQKAIDSLPFINIVRVVIKVHAGVYTEKVSIPALKSFITIQGAGAENTIVQWGDTAETPSPSNRNKPMGTYGSATFAVNSPFFVAKY ITFKNTSPVPPPGAAGKQAVALRISADTAAFVGCRFLGGQDTLYDHFGRHYYKGCYIEGSVDFIFGNGLSYFEGCHVHAIADTYTGALTAQGRSSLLQDT GFSFVKCRVTGSGGALFLGRAWGPFSRVVFAYTYMDDFILPKGWYNWGDPTRELTVFYGQYKCRGAGARFGGRVAWSRELSDDEAKPFLSLSFIDG |
Full Sequence |
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Protein Sequence Length: 343 Download |
MTARSQLSEQ QFIKWVEFVG TLKHSIFKVA KNKLFPSFTL TVDKNPAAGD FTSIQKAIDS 60 LPFINIVRVV IKVHAGVYTE KVSIPALKSF ITIQGAGAEN TIVQWGDTAE TPSPSNRNKP 120 MGTYGSATFA VNSPFFVAKY ITFKNTSPVP PPGAAGKQAV ALRISADTAA FVGCRFLGGQ 180 DTLYDHFGRH YYKGCYIEGS VDFIFGNGLS YFEGCHVHAI ADTYTGALTA QGRSSLLQDT 240 GFSFVKCRVT GSGGALFLGR AWGPFSRVVF AYTYMDDFIL PKGWYNWGDP TRELTVFYGQ 300 YKCRGAGARF GGRVAWSREL SDDEAKPFLS LSFIDGSEWI QL* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02773 | PLN02773 | 3.0e-100 | 46 | 335 | 294 | + pectinesterase | ||
PLN02304 | PLN02304 | 4.0e-104 | 39 | 341 | 310 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 9.0e-107 | 36 | 341 | 306 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 2.0e-107 | 39 | 340 | 302 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 0 | 4 | 342 | 339 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN63186.1 | 0 | 4 | 342 | 45 | 379 | hypothetical protein [Vitis vinifera] |
EMBL | CBI27989.1 | 0 | 26 | 342 | 1 | 313 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_197474.1 | 0 | 4 | 342 | 49 | 383 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002330522.1 | 0 | 3 | 342 | 46 | 381 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002514210.1 | 0 | 4 | 342 | 49 | 383 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 36 | 341 | 7 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-38 | 49 | 341 | 13 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 2e-25 | 38 | 335 | 31 | 360 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 3e-16 | 37 | 328 | 3 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 3e-16 | 37 | 328 | 3 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
ES913245 | 280 | 9 | 288 | 0 |
DT759916 | 277 | 67 | 343 | 0 |
EH701256 | 264 | 56 | 319 | 0 |
EE105585 | 249 | 55 | 303 | 0 |
ES791288 | 295 | 5 | 297 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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