| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10043087 |
| Family | GH28 |
| Protein Properties | Length: 231 Molecular Weight: 24676.3 Isoelectric Point: 8.0964 |
| Chromosome | Chromosome/Scaffold: 25 Start: 1087258 End: 1087950 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 3 | 218 | 0 |
| DGLVEGITSKDSKNFHVNVLGSKNFTFSKFTVVAPGNSPNTDGIHMGRSTDIKILDTSISTGDDCISIRNGLEQLTVERVTCGPGHGIAVGSLGRYPNEA PVKGIFVKNCTLKGTTNGVRIKTWPHFEDIVLEDVFNPIIIDQVYCPWNKCKSKAPSKVTISNVSFKNIRGTSRCVEAIKIDCSPAHPCKNVELAGIDIK AIDGPAAIAVCNNVKP | |||
| Full Sequence |
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| Protein Sequence Length: 231 Download |
| MNDGLVEGIT SKDSKNFHVN VLGSKNFTFS KFTVVAPGNS PNTDGIHMGR STDIKILDTS 60 ISTGDDCISI RNGLEQLTVE RVTCGPGHGI AVGSLGRYPN EAPVKGIFVK NCTLKGTTNG 120 VRIKTWPHFE DIVLEDVFNP IIIDQVYCPW NKCKSKAPSK VTISNVSFKN IRGTSRCVEA 180 IKIDCSPAHP CKNVELAGID IKAIDGPAAI AVCNNVKPII TGIVNPPDCQ * 240 |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02155 | PLN02155 | 3.0e-51 | 3 | 229 | 237 | + polygalacturonase |
| PLN03010 | PLN03010 | 1.0e-52 | 6 | 217 | 221 | + polygalacturonase |
| PLN02793 | PLN02793 | 5.0e-55 | 6 | 229 | 233 | + Probable polygalacturonase |
| pfam00295 | Glyco_hydro_28 | 4.0e-78 | 6 | 217 | 221 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
| PLN02188 | PLN02188 | 3.0e-85 | 1 | 229 | 241 | + polygalacturonase/glycoside hydrolase family protein |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAO62938.1 | 0 | 1 | 230 | 155 | 392 | polygalactorunase PG11 precursor [Medicago sativa] |
| DDBJ | BAA89476.1 | 0 | 1 | 229 | 154 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89477.1 | 0 | 1 | 229 | 154 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89478.1 | 0 | 1 | 229 | 154 | 393 | polygalacturonase [Salix gilgiana] |
| RefSeq | XP_002329175.1 | 0 | 1 | 229 | 154 | 393 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.00000000000002 | 13 | 178 | 171 | 340 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.0000000008 | 42 | 203 | 152 | 320 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.0000000008 | 42 | 203 | 152 | 320 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.0000000008 | 42 | 203 | 152 | 320 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.0000000008 | 42 | 203 | 152 | 320 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| JG075606 | 242 | 1 | 231 | 0 |
| CO106540 | 238 | 3 | 230 | 0 |
| GR460755 | 237 | 6 | 229 | 0 |
| EC947475 | 235 | 5 | 229 | 0 |
| EC939231 | 235 | 5 | 229 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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