Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10043088 |
Family | GH28 |
Protein Properties | Length: 371 Molecular Weight: 39607.6 Isoelectric Point: 7.0455 |
Chromosome | Chromosome/Scaffold: 25 Start: 1092648 End: 1093934 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 39 | 358 | 0 |
TDACASPTPSTVLIPAGTFYCGIVRLNGPCKAPLNIQLLGTITAPPTLPGDTWFFFAYIDNFSITGCGTFDGQGTVIYGKIKSKTINLRFHAINNGLVEG ITSKDSKNFHVNVLESKNFTFSKFTAVAPGDSPNTDGIHMGRSTDIKILDSIISTGDDCISVGDGLQLLTVERVTCGPGHGIAVGSLGRYPNEGPVRGIF VRNCTLKGTTNGVRIKSWPDMEVCHVSDIHFEDIVLEDVLNPIIIDQVYCPWNKCKSKAPSKVTISNVSFKNIRGTTKCLEAIKIDCSPAHPCKNVELAD IDIKTIDGPAAIAVCNNVKP |
Full Sequence |
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Protein Sequence Length: 371 Download |
MLAAISFTKL DAQIFDITKY GATPTPDCDI AQPLTKAFTD ACASPTPSTV LIPAGTFYCG 60 IVRLNGPCKA PLNIQLLGTI TAPPTLPGDT WFFFAYIDNF SITGCGTFDG QGTVIYGKIK 120 SKTINLRFHA INNGLVEGIT SKDSKNFHVN VLESKNFTFS KFTAVAPGDS PNTDGIHMGR 180 STDIKILDSI ISTGDDCISV GDGLQLLTVE RVTCGPGHGI AVGSLGRYPN EGPVRGIFVR 240 NCTLKGTTNG VRIKSWPDME VCHVSDIHFE DIVLEDVLNP IIIDQVYCPW NKCKSKAPSK 300 VTISNVSFKN IRGTTKCLEA IKIDCSPAHP CKNVELADID IKTIDGPAAI AVCNNVKPII 360 TGIVNPPGCQ * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 3.0e-66 | 17 | 366 | 366 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-71 | 13 | 369 | 375 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 5.0e-75 | 1 | 369 | 379 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-101 | 42 | 357 | 325 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-110 | 14 | 369 | 372 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA89476.1 | 0 | 14 | 369 | 30 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 14 | 369 | 30 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 14 | 369 | 30 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89479.1 | 0 | 14 | 369 | 30 | 393 | polygalacturonase [Salix gilgiana] |
RefSeq | XP_002329175.1 | 0 | 1 | 369 | 17 | 393 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.000000000000004 | 99 | 316 | 110 | 338 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 0.0000000000001 | 8 | 356 | 14 | 353 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1czf_B | 0.0000000002 | 104 | 314 | 111 | 317 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 0.0000000002 | 104 | 314 | 111 | 317 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1nhc_F | 0.0000000003 | 120 | 314 | 97 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG075606 | 265 | 108 | 371 | 0 |
CU617067 | 297 | 1 | 285 | 0 |
GR462194 | 271 | 89 | 348 | 0 |
CO114621 | 284 | 17 | 288 | 0 |
CO101156 | 283 | 19 | 289 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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