y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10043209 |
Family | GT47 |
Protein Properties | Length: 419 Molecular Weight: 47413.7 Isoelectric Point: 6.5811 |
Chromosome | Chromosome/Scaffold: 25 Start: 1788935 End: 1791028 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 51 | 346 | 0 |
RLKVFVYELPSKYNKKLLQKDQRCLNHMFAAEIYMHRFLLSSPVRTLNPEEADWFYTPVYPTCDLTPNGLPLPFKSPRIVRSAIQLIASNWPYWNRTEGA DHFFVVPHDFGPCFHYQEEKAIERGILPLLQRATLVQTFGQRNHVCLKEGSITVPPYAPPQKMKSHLIPESVPRSIFVYFRGLFYDVGNDPEGGYYARGA RAAVWENFKNNPLFDISTDHPVTYYEDMQRAVFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGVFVDEKDVPNLDTILTSI |
Full Sequence |
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Protein Sequence Length: 419 Download |
MEIWIWVFSA ILCHAAFLPR MGSAVELART QPTERISGSA GDVLDDDPVG RLKVFVYELP 60 SKYNKKLLQK DQRCLNHMFA AEIYMHRFLL SSPVRTLNPE EADWFYTPVY PTCDLTPNGL 120 PLPFKSPRIV RSAIQLIASN WPYWNRTEGA DHFFVVPHDF GPCFHYQEEK AIERGILPLL 180 QRATLVQTFG QRNHVCLKEG SITVPPYAPP QKMKSHLIPE SVPRSIFVYF RGLFYDVGND 240 PEGGYYARGA RAAVWENFKN NPLFDISTDH PVTYYEDMQR AVFCLCPLGW APWSPRLVEA 300 VVFGCIPVII ADDIVLPFAD AIPWEEIGVF VDEKDVPNLD TILTSIPPEV ILRKQRLLAN 360 PSMKQAMLFP QPAQPGDAFH QVLNGLARKL PHEKSVYLSP GEKVLNWTAG PVGDLKPW* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 2.0e-81 | 51 | 346 | 304 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM64940.1 | 0 | 23 | 418 | 20 | 415 | unknown [Arabidopsis thaliana] |
RefSeq | NP_568941.1 | 0 | 23 | 418 | 20 | 415 | GUT1; catalytic/ glucuronoxylan glucuronosyltransferase [Arabidopsis thaliana] |
RefSeq | XP_002284685.1 | 0 | 1 | 418 | 1 | 416 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002318180.1 | 0 | 1 | 418 | 1 | 417 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511079.1 | 0 | 1 | 418 | 1 | 417 | catalytic, putative [Ricinus communis] |