y
Basic Information | |
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Species | Picea abies |
Cazyme ID | MA_10428603g0020 |
Family | PL1 |
Protein Properties | Length: 439 Molecular Weight: 48795.5 Isoelectric Point: 8.2185 |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 148 | 355 | 0 |
AVIQTEPLWIIFQRDMVIQLKEELIMNSYKTIDGRGANVHIANGACITVQYVTHIIIHGIHIHDCKPAGNAMVRDSPGHYGWRTKSDGDGVSIFGGSNIW VDHCSLSNCADGLIDAVMGSTAITISNNFMTHHDKVMLLGHSDKYKQDVNMQITVAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTIN SQGNRFLA |
Full Sequence |
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Protein Sequence Length: 439 Download |
MSGYRCLLAL LVFVGICCAR SSAGKSFEIF EKLASVVLGR PAVVSGSKDT QKSATKYVEE 60 PEWVVGMVER SINSSRRVLS YLSCGTGNPI DDCWRCNPDW VNNRKRLADC AIGFGRNAIG 120 GKNGRFYVVT DPNDYDAVNP RPGTLRHAVI QTEPLWIIFQ RDMVIQLKEE LIMNSYKTID 180 GRGANVHIAN GACITVQYVT HIIIHGIHIH DCKPAGNAMV RDSPGHYGWR TKSDGDGVSI 240 FGGSNIWVDH CSLSNCADGL IDAVMGSTAI TISNNFMTHH DKVMLLGHSD KYKQDVNMQI 300 TVAFNHFGEG LVQRIPRCRH GYFHVVNNDY THWEMYAIGG SANPTINSQG NRFLAPVNSF 360 SKEVTKHEDA PESAWRQWNW RSEGDLMLNG AFFTRSGAGA SERWRSDMPK RLPLLTPTTT 420 VRCTQPSCLS QLALLSFFV 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-23 | 175 | 353 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 5.0e-67 | 168 | 353 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-72 | 162 | 356 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK25017.1 | 0 | 1 | 394 | 1 | 394 | unknown [Picea sitchensis] |
GenBank | ABR18471.1 | 0 | 4 | 420 | 9 | 427 | unknown [Picea sitchensis] |
GenBank | ABV32549.1 | 0 | 59 | 397 | 34 | 374 | pectase lyase [Prunus persica] |
DDBJ | BAE48664.1 | 0 | 59 | 397 | 34 | 374 | Pectate lyase [Prunus mume] |
RefSeq | XP_002322215.1 | 0 | 41 | 397 | 17 | 364 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 88 | 397 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 88 | 397 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 8e-16 | 157 | 355 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 0.0000000000002 | 166 | 424 | 71 | 345 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1bn8_A | 0.0000000000008 | 236 | 330 | 205 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |